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  1. 3741
    “…Finally, we report a mgSs and mgCST classifier for which source code is provided and may be adapted for use by the microbiome research community. …”
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    Integrating compositional and functional content to describe vaginal microbiomes in health and disease
  2. 3742
    “…A user-friendly web server of comboSC for both clinical and research users is available at www.combosc.top. The source code is also available on GitHub at https://github.com/bm2-lab/comboSC. …”
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    Personalized tumor combination therapy optimization using the single-cell transcriptome
  3. 3743
    “…For 171 sequences, this distance is larger than two, and for only 11 sequences, this distance is larger than five. Availability: The source code is available on http://compbio.cs.wayne.edu/software/rna-newton-polytope. …”
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    The RNA Newton polytope and learnability of energy parameters
  4. 3744
    “…In particular, distinct contributions of different meta-path instances and meta-path types were combined with attention mechanisms. The data sets and source code that support the findings of this study are available at https://github.com/dangdangzhang/M2GMDA. …”
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    Predicting MiRNA-disease associations by multiple meta-paths fusion graph embedding model
  5. 3745
    por Lane, Jennifer C E, Weaver, James, Kostka, Kristin, Duarte-Salles, Talita, Abrahao, Maria Tereza F, Alghoul, Heba, Alser, Osaid, Alshammari, Thamir M, Areia, Carlos, Biedermann, Patricia, Banda, Juan M, Burn, Edward, Casajust, Paula, Fister, Kristina, Hardin, Jill, Hester, Laura, Hripcsak, George, Kaas-Hansen, Benjamin Skov, Khosla, Sajan, Kolovos, Spyros, Lynch, Kristine E, Makadia, Rupa, Mehta, Paras P, Morales, Daniel R, Morgan-Stewart, Henry, Mosseveld, Mees, Newby, Danielle, Nyberg, Fredrik, Ostropolets, Anna, Woong Park, Rae, Prats-Uribe, Albert, Rao, Gowtham A, Reich, Christian, Rijnbeek, Peter, Sena, Anthony G, Shoaibi, Azza, Spotnitz, Matthew, Subbian, Vignesh, Suchard, Marc A, Vizcaya, David, Wen, Haini, de Wilde, Marcel, Xie, Junqing, You, Seng Chan, Zhang, Lin, Lovestone, Simon, Ryan, Patrick, Prieto-Alhambra, Daniel
    Publicado 2020
    “…The full study protocol and analysis source code can be found at https://github.com/ohdsi-studies/Covid19EstimationHydroxychloroquine2.…”
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    Risk of depression, suicide and psychosis with hydroxychloroquine treatment for rheumatoid arthritis: a multinational network cohort study
  6. 3746
    “…Overall, this study implemented a quick, effective, and economical approach for analyzing population-level disparities during a public health event. The source code developed in this study was released for free public use at GitHub. …”
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    Understanding Concerns, Sentiments, and Disparities Among Population Groups During the COVID-19 Pandemic Via Twitter Data Mining: Large-scale Cross-sectional Study
  7. 3747
    “…CONCLUSIONS: SBBs provide a powerful method for aggregating microbes to perform differential abundance analysis as well as phenotype prediction. Our source code can be freely downloaded from http://github.com/briannachrisman/16s_biomarkers.…”
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    Improved detection of disease-associated gut microbes using 16S sequence-based biomarkers
  8. 3748
    “…CONCLUSIONS: ViSCAR empowers researchers to capture and characterize the stochasticity, uncover the mechanisms leading to cellular phenotypes of interest, and decipher a large heterogeneous microbial communities' dynamic behavior. ViSCAR source code is available from GitLab at https://gitlab.com/ManolakosLab/viscar. …”
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    Analytics and visualization tools to characterize single-cell stochasticity using bacterial single-cell movie cytometry data
  9. 3749
    por Ali, Hazrat, Shah, Zubair
    Publicado 2022
    “…It attempts to answer the questions related to applications of GANs, popular GAN architectures, frequently used image modalities, and the availability of source code. METHODS: A search was conducted on 5 databases, namely PubMed, IEEEXplore, Association for Computing Machinery (ACM) Digital Library, Scopus, and Google Scholar. …”
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    Combating COVID-19 Using Generative Adversarial Networks and Artificial Intelligence for Medical Images: Scoping Review
  10. 3750
    “…The proposed methodology can be used in the other applications in the BLAST+ suite or any other application as long as source code is available.…”
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    Profiling the BLAST bioinformatics application for load balancing on high-performance computing clusters
  11. 3751
    por Inglese, V
    Publicado 2009
    “…To assess the fulfillment of these project goals on the release 3.0 of FFMM, the internal quality of its source code was evaluated by means of suitable metrics according to the reference model defined in the standard ISO 9126. …”
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    A Flexible Framework for Magnetic Measurements
  12. 3752
    “…Tables for all quantities versus centrality at present and foreseen collision energies involving Pb nuclei, as well as for collisions of XeXe at sNN=5.44TeV, and AuAu and CuCu at sNN=0.2TeV, are provided. The source code for the improved Monte Carlo Glauber model is made publicly available.…”
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    Improved Monte Carlo Glauber predictions at present and future nuclear colliders
  13. 3753
    “…The corpus is available for download (https://doi.org/10.5281/zenodo.7152295), as well as the source code (https://github.com/mariananeves/goldhamster) and the model (https://huggingface.co/SMAFIRA/goldhamster). …”
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    Automatic classification of experimental models in biomedical literature to support searching for alternative methods to animal experiments
  14. 3754
    “…CONCLUSIONS: In addition to recommendations about machine learning practices for L. monocytogenes source attribution based on genomic data, the present study also provides a freely available workflow to solve other balanced or unbalanced multiclass phenotypes from binary and categorical genomic profiles of other microorganisms without source code modifications. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-023-09667-w.…”
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    Harmonization of supervised machine learning practices for efficient source attribution of Listeria monocytogenes based on genomic data
  15. 3755
    “…To serve the plant research community, our modulated source code, detailed comments, executables (.exe for Windows; .app for Mac), and experimental results are freely available at https://github.com/Crop-Phenomics-Group/Leaf-GP/releases. …”
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    Leaf-GP: an open and automated software application for measuring growth phenotypes for arabidopsis and wheat
  16. 3756
    “…Finally, we combine meta-path based node embedding and pair embedding with the cost function to learn and predict miRNA-disease association. The source code and data sets that verify the results of our research are shown at https://github.com/liubailong/CEMDA. …”
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    Combined embedding model for MiRNA-disease association prediction
  17. 3757
    “…To present a reproducible work, source code, trained models, data as well as visualization results are made publicly available. …”
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    Volumetric macromolecule identification in cryo-electron tomograms using capsule networks
  18. 3758
    “…APA-Scan is implemented in Python3. Source code and a comprehensive user’s manual are freely available at https://github.com/compbiolabucf/APA-Scan. …”
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    APA-Scan: detection and visualization of 3′-UTR alternative polyadenylation with RNA-seq and 3′-end-seq data
  19. 3759
    “…CONCLUSION: Magnetique (https://shiny.dieterichlab.org/app/magnetique) is the first online application to provide an interactive view of the HF transcriptome at the RNA isoform level and to include transcription factor signaling and RBP:RNA interaction networks. The source code for both the analyses (https://github.com/dieterich-lab/magnetiqueCode2022) and the web application (https://github.com/AnnekathrinSilvia/magnetique) is available to the public. …”
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    Magnetique: an interactive web application to explore transcriptome signatures of heart failure
  20. 3760
    “…It will further advance our knowledge of how microbial communities influence and are influenced by the chemical makeup of the surrounding system. The source code and User’s guide of MetaboDirect are freely available through (https://github.com/Coayala/MetaboDirect) and (https://metabodirect.readthedocs.io/en/latest/), respectively. …”
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    MetaboDirect: an analytical pipeline for the processing of FT-ICR MS-based metabolomic data
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