“…These metrics are either calculated by analyzing the source code or relative to project management metadata. …”
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“…We recommend combining sequencing artifacts removal, and quality score based read filtering and base trimming as the most consistent method for improving sequence quality and downstream assemblies. ngsShoRT source code, user guide and tutorial are available at http://research.bioinformatics.udel.edu/genomics/ngsShoRT/. ngsShoRT can be incorporated as a pre-processing step in genome and transcriptome assembly projects.…”
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“…Additionally, the applet source code in Visual Basic is provided online, allowing this book to be used for teaching simple programming techniques. …”
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“…</p> <p><strong>About the speaker</strong></p> <p>Thomas worked with the CERN Computer Security team in 2010, writing his EPFL master studies thesis, on the topic of static source code analysis. Since then, he spent a couple of years as a Java Consultant, before joining the State of Geneva as a developer on the internet voting system.…”
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“…Samples of the book’s source code can be found at github.com/springer-math/adventures-in-graph-theory. …”
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“…A multitude of layers translate and optimize source code, written in compiled and interpreted programming languages such as C++, Python or Java, to machine language. …”
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“…A multitude of layers translate and optimize source code, written in compiled and interpreted programming languages such as C++, Python or Java, to machine language. …”
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“…Provides the first unified view of the field Offers an extensive review of state-of-the-art stochastic local search algorithms and their applications Presents and applies an advanced empirical methodology for analyzing the behavior of SLS algorithms A companion website offers lecture slides as well as source code and Java applets for exploring and demonstrating SLS algorithms.…”
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“…By identifying common patterns and time consuming procedures, and by agreeing on standard repository structures, naming conventions and tooling, we have gained a turnkey solution which automates the compilation of binaries and generation of documentation, thus guaranteeing they are up to date and match the source code in the repository. The pipelines generate deployment-ready software releases, which pass through both static code analysis and unit tests before automatically being deployed to short and long-term repositories. …”
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“…The OpenAPI Specification is used to describe the API and generate parts of the source code of the server and client. Based on selection criteria received from the client, the server executes SQL queries against the Phoenix tables, retrieves the data, and returns it to the client. …”
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“…The OpenAPI Specification is used to describe the API and generate parts of the source code of the server and client. Based on selection criteria received from the client, the server executes SQL queries against the Phoenix tables, retrieves the data, and returns it to the client. …”
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“…A continuous integration system is crucial to maintain the quality of the 6 millions lines of C++ and Python source code of the LHCb software in order to ensure consistent builds of the software as well as to run the unit and integration tests. …”
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“…For measurements based on binned data (histograms), the HistFactory family of statistical models (Cranmer et al., 2012) has been widely used in both Standard Model measurements (ATLAS Collaboration, 2013) as well as searches for new physics (ATLAS Collaboration, 2018). pyhf is a pure-Python implementation of the HistFactory model specification and implements a declarative, plain-text format for describing HistFactorybased likelihoods that is targeted for reinterpretation and long-term preservation in analysis data repositories such as HEPData (Maguire et al., 2017). The source code for pyhf has been archived on Zenodo with the linked DOI: (Heinrich, Lukas and Feickert, Matthew and Stark, Giordon, 2020). …”
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“…AVAILABILITY & IMPLEMENTATION: The source code for PhysiPKPD is located here: https://github.com/drbergman/PhysiPKPD.…”
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“…AVAILABILITY AND IMPLEMENTATION: Source code: https://github.com/CarragherLab/phenonaut, Documentation: https://carragherlab.github.io/phenonaut, PyPI package: https://pypi.org/project/phenonaut/.…”
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“…In this article, an educational visualization tool for biological sequence alignment is presented, and the source code is released in order to encourage the collaborative power of open-source software, with the expectation of further contributions from the community in the future. …”
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“…The system is based on open-source hardware and delivers an open-source code for an adaptive Kalman filter to enhance positioning precision for data quality assurance at an outdoor experimental site. …”
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“…AVAILABILITY AND IMPLEMENTATION: VirPipe source code and documentation are freely available for download at https://github.com/KijinKims/VirPipe, implemented in Python and Nextflow.…”
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“…AVAILABILITY AND IMPLEMENTATION: The manual and source code are available at https://github.com/TongZhou2017/itol.toolkit…”
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“…AVAILABILITY AND IMPLEMENTATION: CodingDiv is released under the GPL license. Source code is available at https://github.com/ericolo/codingDiv. …”
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