“…CONCLUSIONS: The score regularization method can be used as a general post-processing step for improving peptide identifications. Source codes and data sets are available at: http://bioinformatics.ust.hk/SRPI.rar.…”
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“…Data are available at http://stage.louisville.edu/faculty/x0zhan17/software/software-development/mspa. The R source codes are available at http://www.biostat.iupui.edu/~ChangyuShen/CodesPeakAlignment.zip. …”
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“…Availability: Open source codes, executable binary, useful scripts, all the experimental data and the results are freely available as part of the Supplementary Material at http://code.google.com/p/campways/. …”
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“…The experimental results of applying RNA-CODE to RNA-seq of Arabidopsis and a metagenomic data set sampled from human guts demonstrate that RNA-CODE competes favorably in both sensitivity and specificity with other tools. The source codes of RNA-CODE can be downloaded at http://www.cse.msu.edu/~chengy/RNA_CODE.…”
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“…By applying to two real datasets, we demonstrated that our method could provide a global picture of methylation variation in studied samples. R source codes to implement the proposed method were freely available at http://www.csjfann.ibms.sinica.edu.tw/eag/programlist/ICDMR/ICDMR.html.…”
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“…The two alignment-free programmes are accessible through a web interface at ‘Göttingen Bioinformatics Compute Server (GOBICS)’: http://spaced.gobics.de http://kmacs.gobics.de and the source codes can be downloaded.…”
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“…Finally, a web-server, the source codes, and the dataset of Rsite2 are available at http://www.cuialb.cn/rsite2.…”
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“…The software package and source codes of TopDom are available at http://zhoulab.usc.edu/TopDom/.…”
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“…Since random sampling is performed at remote sensor arrays, less data need to be transmitted over lossy wireless channels to the fusion center (FC), and the expensive source coding operation at sensor nodes can be avoided. …”
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“…HAlign-II with open-source codes and datasets was established at http://lab.malab.cn/soft/halign.…”
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“…We used this tool to analyze 72002 cancer immunotherapy publications and 1469 clinical trials from public databases. All source codes are available under an open access license. …”
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“…The experiment results have demonstrated that our method could obtain competitive segmentation performance (average Dice index > 0.88), compared with alternative multi-atlas based image segmentation methods under comparison. Source codes of the methods under comparison are publicly available at www.nitrc.org/frs/?…”
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“…Predominantly auditory-cortical sources code for frequency deviance whilst frontal sources are associated with tracking more complex sequence structure.…”
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“…Our research is performed on a TLD dataset which contains challenging situations for tracking. Source codes and implementation details for the trackers are published to make both the reproduction of the results reported in this paper and the re-use and further development of the trackers for other researchers. …”
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“…TogoGenome and TogoStanza have been under development since 2012 and are freely available along with their source codes on the GitHub repositories at https://github.com/togogenome/ and https://github.com/togostanza/, respectively, under the MIT license.…”
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“…The study demonstrated a new avenue to enhance the accuracy of GPCR function annotation through the combination of text mining and induction matrix completion over baseline methods in critical assessment of protein function annotation algorithms and literature-based GO annotation methods. Source codes of TM–IMC and the involved datasets can be freely downloaded from https://zhanglab.ccmb.med.umich.edu/TM-IMC for academic purposes.…”
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“…We also introduce twenty new potential drug-target pairs for interaction based on high prediction scores. The source codes and implementation details of our methods are available from https://github.com/farshidrayhanuiu/FRnet-DTI/ and also readily available to use as an web application from http://farshidrayhan.pythonanywhere.com/FRnet-DTI/.…”
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“…Interfaces to MATLAB source codes are provided. The system is inexpensive, relatively easy to build and can be assembled quickly. …”
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“…We demonstrate that our method generates more appropriate alignments for template-based modeling, especially for remote homologs. All source codes are available at https://github.com/shuichiro-makigaki/agora.…”
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“…In the process of inertial measurement unit (IMU) calibration, the correction coefficients are calculated, which allow partial compensating the influence of destabilizing factors and determining the perpendicularity inaccuracy for sensitivity axes, and the conversion coefficients for each axis, which transform the sensor source codes into the measure unit and bias for each axis. …”
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