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  1. 3961
    por Castro-Orgaz, Oscar, Hager, Willi H
    Publicado 2019
    “…As supporting material, a collection of source codes written in Visual Basic and inserted as macros in Microsoft Excel® is available. …”
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    Shallow water hydraulics
  2. 3962
    “…This does not require any modifications of the FORTRAN source codes. The resulting Concurrent MC event generator KoralW&YFSWW3 looks from the user's point of view as a regular single MC event generator with all the standard features.…”
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    The Monte Carlo Program KoralW version 1.51 and The Concurrent Monte Carlo KoralW\&YFSWW3 with All Background Graphs and First Order Corrections to W-Pair Production
  3. 3963
    “…The model achieves an average of 93.39%, 88.91%, 96.78% and 92.35% accuracy, precision, recall and F1 scores, respectively. The supporting source codes are presented in https://github.com/BihanBanerjee/MonkeyPox.…”
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    Online Artículo Texto
    Monkeypox detection from skin lesion images using an amalgamation of CNN models aided with Beta function-based normalization scheme
  4. 3964
    “…AVAILABILITY AND IMPLEMENTATION: The datasets, pre-computed features, source codes, and the trained model are available at https://github.com/biomed-AI/GraphBepi.…”
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    Online Artículo Texto
    Identifying B-cell epitopes using AlphaFold2 predicted structures and pretrained language model
  5. 3965
    “…AVAILABILITY AND IMPLEMENTATION: All source codes of CellBRF are freely available at https://github.com/xuyp-csu/CellBRF.…”
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    Online Artículo Texto
    CellBRF: a feature selection method for single-cell clustering using cell balance and random forest
  6. 3966
    por Kim, Yeojin, Lee, Hyunju
    Publicado 2023
    “…DISCUSSION: By integrating prior knowledge about pathways, PINNet can reveal essential pathways related to AD. The source codes are available at https://github.com/DMCB-GIST/PINNet.…”
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    Online Artículo Texto
    PINNet: a deep neural network with pathway prior knowledge for Alzheimer's disease
  7. 3967
    “…The G2P container and source codes are freely accessible at https://g2p-env.github.io/.…”
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    Online Artículo Texto
    G2P Provides an Integrative Environment for Multi-model genomic selection analysis to improve genotype-to-phenotype prediction
  8. 3968
    “…Together with the availability of datasets and source codes, we envision that MULGA can be explored as a useful tool for DPI prediction and drug repositioning. …”
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    Online Artículo Texto
    MULGA, a unified multi-view graph autoencoder-based approach for identifying drug–protein interaction and drug repositioning
  9. 3969
    “…This novel approach can also be applied to other protein targets of various diseases, thereby contributing to the future development of new drugs. Source codes and data are available at https://github.com/ecust-hc/ScaffoldGVAE. …”
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    Online Artículo Texto
    ScaffoldGVAE: scaffold generation and hopping of drug molecules via a variational autoencoder based on multi-view graph neural networks
  10. 3970
    “…The results for the independent test sets show that our model outperforms the state-of-the-art methods on all six species. The source codes and data for MSTL-Kace are available at https://github.com/leo97king/MSTL-Kace.…”
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    Online Artículo Texto
    MSTL-Kace: Prediction of Prokaryotic Lysine Acetylation Sites Based on Multistage Transfer Learning Strategy
  11. 3971
    “…CONCLUSION: We anticipate that the description and availability of our developed solution with open-sourced codes may help facilitate radiological education and stimulate the development of similar AI-augmented educational tools. …”
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    Online Artículo Texto
    Towards AI-augmented radiology education: a web-based application for perception training in chest X-ray nodule detection
  12. 3972
    “…In addition, TAM can be used to identify novel miRNA biomarkers. TAM tool, source codes, and miRNA category data are freely available at http://cmbi.bjmu.edu.cn/tam.…”
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    Texto
    TAM: A method for enrichment and depletion analysis of a microRNA category in a list of microRNAs
  13. 3973
    “…The http://bioxsd.org web page offers documentation, examples of data in BioXSD format, example workflows with source codes in common programming languages, an updated list of compatible web services and tools and a repository of feature requests from the community. …”
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    Texto
    BioXSD: the common data-exchange format for everyday bioinformatics web services
  14. 3974
    por Han, Henry
    Publicado 2011
    “…CONCLUSIONS: Our work not only suggests an alternative direction from machine learning to accelerate mass spectral proteomic technologies into a clinical routine by treating an input profile as a ‘profile-biomarker’, but also has positive impacts on large scale ‘omics' data mining. Related source codes and data sets can be found at: https://sites.google.com/site/heyaumbioinformatics/home/proteomics…”
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    Online Artículo Texto
    A high performance profile-biomarker diagnosis for mass spectral profiles
  15. 3975
    “…The executables and source codes are available at the authors’ websites: e.g. http://www.cs.toronto.edu/∼wkc/kmerHMM.…”
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    Online Artículo Texto
    DNA motif elucidation using belief propagation
  16. 3976
    “…CONCLUSIONS: The proposed method is a promising tool for predicting the immunogenic epitopes. The source codes and datasets are available in S1 File.…”
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    Online Artículo Texto
    Accurate Prediction of Immunogenic T-Cell Epitopes from Epitope Sequences Using the Genetic Algorithm-Based Ensemble Learning
  17. 3977
    “…Availability and implementation: Source codes are available at https://github.com/kasohn/hiHMM. …”
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    Online Artículo Texto
    hiHMM: Bayesian non-parametric joint inference of chromatin state maps
  18. 3978
    por Ren, Jing, Liu, Qian, Ellis, John, Li, Jinyan
    Publicado 2015
    “…These bound structures may contain unfair binding information such as bound-state B-factors and protrusion index which could exaggerate the epitope prediction performance. Source codes are available on request.…”
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    Online Artículo Texto
    Positive-unlabeled learning for the prediction of conformational B-cell epitopes
  19. 3979
    “…In conclusion, the proposed method is promising for the transposon-derived piRNA prediction. The source codes and datasets are available in https://github.com/zw9977129/piRNAPredictor. …”
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    Online Artículo Texto
    A genetic algorithm-based weighted ensemble method for predicting transposon-derived piRNAs
  20. 3980
    “…All relevant data and source codes are available from the Github repository at the following URL: https://github.com/BBCMdP/HMMERCTTER.…”
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    Online Artículo Texto
    HMMER Cut-off Threshold Tool (HMMERCTTER): Supervised classification of superfamily protein sequences with a reliable cut-off threshold
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