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  1. 4001
    por Hachaj, Tomasz
    Publicado 2023
    “…The mean absolute error of the proposed solution does not contain statistically significant differences from state-of-the-art approaches like Deep3D and other DIBR-based approaches using different inpaint functions. Since both the source codes and the generated videos are available for download, all experiments can be reproduced, and one can apply our algorithm to any selected video or single image to convert it.…”
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    Adaptable 2D to 3D Stereo Vision Image Conversion Based on a Deep Convolutional Neural Network and Fast Inpaint Algorithm
  2. 4002
    por Yang, Rendong, Su, Zhen
    Publicado 2010
    “…Availability: ARSER is implemented by Python and R. All source codes are available from http://bioinformatics.cau.edu.cn/ARSER Contact: zhensu@cau.edu.cn…”
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    Analyzing circadian expression data by harmonic regression based on autoregressive spectral estimation
  3. 4003
    “…Availability: Matlab and C++ source codes of the method available at http://cs.ru.nl/˜gori/software/MTR.tar.gz. …”
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    MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks
  4. 4004
    por Wang, Rui-Sheng, Albert, Réka
    Publicado 2011
    “…Its results serve as testable predictions, provide insights into signal transduction and regulatory mechanisms and can guide targeted computational or experimental follow-up studies. The source codes for the algorithms developed in this study can be found at http://www.phys.psu.edu/~ralbert/ESM.…”
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    Elementary signaling modes predict the essentiality of signal transduction network components
  5. 4005
    “…The current implementation of eCBS consistently outperforms the hybrid CBS 4× to 20× in computation time without loss of accuracy. Source codes, supplementary materials, supplementary figures, and supplementary tables can be found at http://ntumaps.cgm.ntu.edu.tw/eCBSsupplementary.…”
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    Online Artículo Texto
    A model-based circular binary segmentation algorithm for the analysis of array CGH data
  6. 4006
    por Ren, Jing, Liu, Qian, Ellis, John, Li, Jinyan
    Publicado 2014
    “…Availability and implementation: Source codes are available on request. Contact: jinyan.li@uts.edu.au Supplementary information: Supplementary data are available at Bioinformatics online.…”
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    Tertiary structure-based prediction of conformational B-cell epitopes through B factors
  7. 4007
    “…This study can provide a new way to perform virtual screening effectively through integrating molecular docking based on grid computing, MD simulations and free energy calculations. The source codes of MolGridCal are freely available at http://molgridcal.codeplex.com.…”
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    Online Artículo Texto
    Search for β(2) Adrenergic Receptor Ligands by Virtual Screening via Grid Computing and Investigation of Binding Modes by Docking and Molecular Dynamics Simulations
  8. 4008
    “…CONCLUSIONS: By using a semi-supervised method as well as taking the advantages of various features, the proposed algorithm is able not only to achieve high classification quality, but also to reduce much computational cost. The source codes of the algorithm can be downloaded at http://it.hcmute.edu.vn/bioinfo/metapro/SeMeta.html ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12859-015-0872-x) contains supplementary material, which is available to authorized users.…”
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    A novel semi-supervised algorithm for the taxonomic assignment of metagenomic reads
  9. 4009
    “…The performance of the developed algorithm is tested and found to be more efficient, i.e., running time reduced by 80–90 % without compromising accuracy of comparison when compared with the existing methods. Source codes for different functions have been developed in R. …”
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    An efficient algorithm for protein structure comparison using elastic shape analysis
  10. 4010
    “…Software along with source codes and instructions available at https://sourceforge.net/projects/chemengine/files/?…”
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    Online Artículo Texto
    ChemEngine: harvesting 3D chemical structures of supplementary data from PDF files
  11. 4011
    “…The ensemble methods can produce better performances than individual methods, and outperform existing state-of-the-art methods. The datasets and source codes are available at https://github.com/zw9977129/drug-drug-interaction/. …”
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    Online Artículo Texto
    Predicting potential drug-drug interactions by integrating chemical, biological, phenotypic and network data
  12. 4012
    “…By preventing narrow blocks, PSI-BLASTexB upgrades the PSI-BLAST performance remarkably. Binaries and source codes of PSI-BLASTexB (MBW = 25) are available at https://github.com/kyungtaekLIM/PSI-BLASTexB. …”
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    Simple adjustment of the sequence weight algorithm remarkably enhances PSI-BLAST performance
  13. 4013
    “…The Shiny and JavaScript source codes have been deposited to GitHub: https://github.com/msolmazm/sema. …”
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    Online Artículo Texto
    Graphical data mining of cancer mechanisms with SEMA
  14. 4014
    “…AVAILABILITY AND IMPLEMENTATION: Weighted edge network analysis (WENA) data and source codes for performing spectral decomposition of the signal (SDS) and WENA analysis, both written using Python, are available at http://www.broca.inserm.fr/HD-WENA/. …”
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    Online Artículo Texto
    Genetic cooperativity in multi-layer networks implicates cell survival and senescence in the striatum of Huntington’s disease mice synchronous to symptoms
  15. 4015
    por Mazurek, Patryk, Hachaj, Tomasz
    Publicado 2021
    “…We have evaluated our research on large benchmark dataset using various state-of-the-art OR architectures (YOLO, MobileNet, RetinaNet) and clustering algorithms (DBSCAN and OPTICS) obtaining promising results. Both our source codes and evaluation data sets are available for download, so our results can be easily reproduced.…”
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    Online Artículo Texto
    SLAM-OR: Simultaneous Localization, Mapping and Object Recognition Using Video Sensors Data in Open Environments from the Sparse Points Cloud
  16. 4016
    “…The analytical pipeline source codes and demo data are available at https://github.com/whussain2/Analysis-pipeline. …”
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    Online Artículo Texto
    Open-source analytical pipeline for robust data analysis, visualizations and sharing in crop breeding
  17. 4017
    “…The overall results are satisfactory, thereby confirming the usefulness of AAPSO in dealing with varied real-life problems. The supporting source codes of this work can be found at https://github.com/rishavpramanik/AAPSO.…”
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    Online Artículo Texto
    An adaptive and altruistic PSO-based deep feature selection method for Pneumonia detection from Chest X-rays
  18. 4018
    “…The critical analysis of the limitations and shortcomings of BA is also mentioned. The open-source codes of BA code are given to build a wealthy BA review. …”
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    Online Artículo Texto
    Recent advances of bat-inspired algorithm, its versions and applications
  19. 4019
    “…Examined in this paper is the Gray and Wyner source coding for a simple network of correlated multivariate Gaussian random variables, [Formula: see text] and [Formula: see text]. …”
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    A Realization Approach to Lossy Network Compression of a Tuple of Correlated Multivariate Gaussian RVs †
  20. 4020
    por Tsukiyama, Sho, Kurata, Hiroyuki
    Publicado 2022
    “…The Cross-attention PHV web server and source codes are freely available at https://kurata35.bio.kyutech.ac.jp/Cross-attention_PHV/ and https://github.com/kuratahiroyuki/Cross-Attention_PHV, respectively.…”
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    Cross-attention PHV: Prediction of human and virus protein-protein interactions using cross-attention–based neural networks
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