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4021por Lin, Shenggeng, Chen, Weizhi, Chen, Gengwang, Zhou, Songchi, Wei, Dong-Qing, Xiong, Yi“…Furthermore, the effectiveness of supervised contrastive learning is validated by ablation experiment, and the feasibility of MDDI-SCL is supported by case studies. The source codes are available at https://github.com/ShenggengLin/MDDI-SCL. …”
Publicado 2022
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4022“…Executable versions, source codes, sequences used for development and usage instructions are available at (http://www.proteininformatics.org/mkumar/bacarscan/downloads.html) and GitHub repository (https://github.com/mkubiophysics/BacARscan).…”
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4023“…AVAILABILITY AND IMPLEMENTATION: The source codes reproducing the main results are available on GitHub: https://gitfront.io/r/user-4316673/36e8714573f3fbfa0b24690af5d1a9d5ca159cf4/scan/. …”
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4024“…Our algorithm outperforms the state-of-the-art methods in accuracy of prediction and runtime and introduces a novel method for 3D structure prediction from Hi-C data. All our source codes and data are available at https://github.com/OluwadareLab/HiC-GNN.…”
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4025por Bai, Yongsheng, Kinne, Jeff, Donham, Brandon, Jiang, Feng, Ding, Lizhong, Hassler, Justin R., Kaufman, Randal J.“…The RSR package including source codes is available at http://bioinf1.indstate.edu/RSR and its pipeline source codes are also freely available at https://github.com/xuric/read-split-run for academic use. …”
Publicado 2016
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4026por Yegül, Uğur“…An automatic control system was developed and tested, employing a microcontroller, various sensors, appropriate open-source codes, and original software. Electrical conductivity (EC), power of hydrogen (pH), dissolved oxygen (DO), and temperature (T) values were determined successfully by the developed control system. …”
Publicado 2023
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4027“…AVAILABILITY AND IMPLEMENTATION: Source codes for PyTorch implementation of DGCCA and other DeepMOIS-MC modules are available at GitHub (https://github.com/duttaprat/DeepMOIS-MC). …”
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4028“…StrainScan takes short reads and a set of reference strains as input and its source codes are freely available at https://github.com/liaoherui/StrainScan. …”
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4029“…With little effort, developers can plug their own algorithms into the OSCAR server without revealing the source codes, which will equip their command line executables with user-friendly interface and interactive analysis capability. …”
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4030“…The considered examples indicate that the annealing algorithm produce biologically meaningful layouts: The function of the most of the anti-hierarchical links is indeed to send a feedback signal to the upstream pathway elements. Source codes of F90 and Matlab implementation of the two algorithms are available at…”
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4031por Ho, Shinn-Ying, Chao, Chih-Yuan, Huang, Hui-Ling, Chiu, Tzai-Wen, Charoenkwan, Phasit, Hwang, Eric“…The ImageJ plugin with supports of batch processing is easily customized for dealing with high-content screening applications. The source codes of NeurphologyJ (interactive and high-throughput versions) and the images used for testing are freely available (see Availability).…”
Publicado 2011
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4032“…The system can be installed on a virtual computer, allowing the user to run the system alongside any other operating system. Source codes for all programs are provided under GNU license, which makes it possible to transfer the programs to other systems if so desired. …”
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4033“…Further analysis of the results of this ensemble method shows that the ensemble method can obtain more targets which could not be found by any of the single methods, and the discovered targets are more statistically significant and functionally enriched. The source codes, datasets, miRNA target predictions by all methods, and the ground truth for validation are available in the Supplementary materials.…”
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4034por Kim, SungHwan, Herazo-Maya, Jose D., Kang, Dongwan D., Juan-Guardela, Brenda M., Tedrow, John, Martinez, Fernando J., Sciurba, Frank C., Tseng, George C., Kaminski, Naftali“…The iPF software package and all source codes are publicly available. CONCLUSIONS: Identification of subclusters with distinct clinical and biomolecular characteristics suggests that integration of phenomic and other omics information could lead to identification of novel mechanism-based disease sub-phenotypes. …”
Publicado 2015
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4035por Fidaner, Işık Barış, Cankorur-Cetinkaya, Ayca, Dikicioglu, Duygu, Kirdar, Betul, Cemgil, Ali Taylan, Oliver, Stephen G.“…Availability and implementation: The C++ and QT source codes, the GUI applications for Windows, OS X and Linux operating systems and user manual are freely available for download under the GNU GPL v3 license at http://www.cmpe.boun.edu.tr/content/CnG. …”
Publicado 2016
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4036“…It competes favorably with other tools on viral contig binning. The source codes are available at: https://github.com/chjiao/VirBin.…”
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4037por Ahmed, Sajid, Hossain, Zahid, Uddin, Mahtab, Taherzadeh, Ghazaleh, Sharma, Alok, Shatabda, Swakkhar, Dehzangi, Abdollah“…Its benchmark dataset, source codes, and documentation are available at https://github.com/zahid6454/iRNA5hmC-PS.…”
Publicado 2020
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4038por Zadeh Shirazi, Amin, McDonnell, Mark D., Fornaciari, Eric, Bagherian, Narjes Sadat, Scheer, Kaitlin G., Samuel, Michael S., Yaghoobi, Mahdi, Ormsby, Rebecca J., Poonnoose, Santosh, Tumes, Damon J., Gomez, Guillermo A.“…CONCLUSIONS: This work identified key histopathological features that correlate with patient survival and detected spatially associated genetic signatures that contribute to tumour-stroma interactions and which should be investigated as new targets in glioblastoma. The source codes and datasets used are available in GitHub: https://github.com/amin20/GBM_WSSM.…”
Publicado 2021
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4039“…Moreover, case studies of three common lncRNAs were performed for predicting their potential lncRNA target genes and the results confirmed the effectiveness of WAFNRLTG. The source codes and all data of WAFNRLTG can be freely downloaded at https://github.com/HGDYZW/WAFNRLTG.…”
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4040por Khan, Md. Saikat Islam, Rahman, Anichur, Debnath, Tanoy, Karim, Md. Razaul, Nasir, Mostofa Kamal, Band, Shahab S., Mosavi, Amir, Dehzangi, Iman“…Our proposed models, employed datasets, and all the source codes are publicly available at: (https://github.com/saikat15010/Brain-Tumor-Detection).…”
Publicado 2022
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