“…Availability and implementation: Branch is hosted at http://biobranch.org/ and the open source code is available at http://bitbucket.org/sulab/biobranch/. …”
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“…Applied to simulation data, artificial laboratory mixtures, and field samples, the model provides reasonable inference with as few as 10 reads or 50 SNPs and works efficiently even with much larger data sets. Source code and example data for the model are provided in an open source fashion. …”
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“…Availability and implementation: SMeagol runs on Matlab R2014 and later, and uses compiled binaries in C for reaction–diffusion simulations. Documentation, source code and binaries for Mac OS, Windows and Ubuntu Linux can be downloaded from http://smeagol.sourceforge.net. …”
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“…We detail the many challenges that will need to be tackled in the pursuit of efficiency. The software source code can be consulted at https://github.com/alexandrupaler/tqec.…”
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“…The software, including source code, current models and databases, is available from https://sourceforge.net/projects/bioppsy/.…”
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“…All major browsers are supported and full source code is available under a GPL2 license from http://thegrantlab.org/bio3d-web. …”
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“…Both the program and its source code are available under GNU General Public License at [www.cyf-kr.edu.pl/~rotofils/drawwing.html]. …”
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“…Here we give a detailed description of the usage of 3dRPC. The source code is available at http://biophy.hust.edu.cn/3dRPC.html.…”
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“…Two configurations are described, giving four or six output wavelengths and one or two single-mode fiber outputs, with all CAD files, machinist drawings, and controller source code openly available.…”
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“…The backend data pipeline was developed and deployed on a shared AWS EC2 instance. Source code is available at https://github.com/NCBI-Hackathons/rnaseqview.…”
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“…The Mitochondrial tRNA Informatics Predictor (MitoTIP) is available through MITOMAP at www.mitomap.org. The source code for MitoTIP is available at www.github.com/sonneysa/MitoTIP.…”
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“…Plugin also available for continuous updates through ImageJ update system, add http://sites.imagej.net/Cellular-Biophysics-KTH/ as update site in ImageJ. Java and CUDA source code freely available on the web at https://github.com/KristofferBernhem/SMlocalizer. …”
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“…The website provides tutorials, usage note as well as download links to the source code.…”
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“…AVAILABILITY AND IMPLEMENTATION: FQC is implemented in Python 3 and Javascript, and is maintained under an MIT license. Documentation and source code is available at: https://github.com/pnnl/fqc.…”
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“…AVAILABILITY AND IMPLEMENTATION: Source code of Threshold-seq is freely available as an R package at: http://cm.jefferson.edu/threshold-seq/ SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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“…AVAILABILITY AND IMPLEMENTATION: Source code of the ASAR is accessible at GitHub (https://github.com/Askarbek-orakov/ASAR).…”
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“…Availability and Implementation: ProtVista is a JavaScript component released as an open source project under the Apache 2 License. Documentation and source code are available at http://ebi-uniprot.github.io/ProtVista/. …”
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“…In particular, the supplemental information provides results on training and testing five regression models (using the same data and descriptors as the regression of E(hull) in main text) to predict the formation energies of perovskite oxides. We provided source code that trains the machine learning models on the provided training dataset and predicts the stability for the test data.…”
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“…AVAILABILITY AND IMPLEMENTATION: The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. …”
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“…This paper accompanies the release of the source code as a modular software package for the robotics community compatible with the Robot Operating System (ROS).…”
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