“…AVAILABILITY AND IMPLEMENTATION: MomentClosure.jl is freely accessible under the MIT licence. Source code and documentation are available at https://github.com/augustinas1/MomentClosure.jl.…”
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“…AVAILABILITY AND IMPLEMENTATION: Viola is available on pip (https://pypi.org/project/Viola-SV/) and the source code is on GitHub (https://github.com/dermasugita/Viola-SV). …”
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“…Thus, CSSR will be useful for the analysis of experimentally determined and computationally predicted RNA 3D structures alike. The source code of CSSR is available at https://github.com/pylelab/CSSR.…”
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“…AVAILABILITY AND IMPLEMENTATION: RevUP is freely available at http://www.revup-classifier.ca. The source code is available at https://github.com/wassermanlab/revup. …”
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“…AVAILABILITY AND IMPLEMENTATION: HTSeq 2.0 is released as an open-source software under the GNU General Public License and is available from the Python Package Index at https://pypi.python.org/pypi/HTSeq. The source code is available on Github at https://github.com/htseq/htseq. …”
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“…AVAILABILITY AND IMPLEMENTATION: Source code: https://github.com/elixir-europe/biovalidator, Release: v1.9.1, License: Apache License 2.0, Deployed at: https://www.ebi.ac.uk/biosamples/schema/validator/validate. …”
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“…AVAILABILITY AND IMPLEMENTATION: expam is an open-source Python application released under the GNU General Public Licence v3.0. expam installation instructions, source code and tutorials can be found at https://github.com/seansolari/expam. …”
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“…AVAILABILITY AND IMPLEMENTATION: The Gilda web service is available at http://grounding.indra.bio with source code, documentation and tutorials available via https://github.com/indralab/gilda. …”
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“…AVAILABILITY AND IMPLEMENTATION: Source code is freely available at https://github.com/nsmro/SYNPHONI, implemented in Python 3.9. …”
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“…AVAILABILITY AND IMPLEMENTATION: The source code is available at https://github.com/czbiohub/MIDAS2. …”
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“…AVAILABILITY AND IMPLEMENTATION: IMMerge is an open-source project under MIT license. Source code and user manual are available at https://github.com/belowlab/IMMerge.…”
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“…AVAILABILITY AND IMPLEMENTATION: The manual and source code are available at https://github.com/pachterlab/gget. …”
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“…AVAILABILITY AND IMPLEMENTATION: YaHS is implemented in C and licensed under the MIT License. The source code, documentation and tutorial are available at https://github.com/sanger-tol/yahs. …”
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“…AVAILABILITY AND IMPLEMENTATION: The source code of SAMStat and code to reproduce the results are found here: https://github.com/timolassmann/samstat.…”
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“…Documentation, downloads and source code are available at http://js.cytoscape.org. …”
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“…AVAILABILITY AND IMPLEMENTATION: Gos is released under the MIT License and available on the Python Package Index (PyPI). The source code is publicly available on GitHub (https://github.com/gosling-lang/gos), and documentation with examples can be found at https://gosling-lang.github.io/gos.…”
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“…The majority of the simulations were performed in the Wolfram Mathematica environment, and the compact source code is provided as a substantial and integral part of the book.…”
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“…It is crucial to guide refactoring with a profiling system that gives hints to regions in source-code for possible and necessary re-engineering and which kind of optimization could lead to final success. …”
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“…--HTML--><p style="text-align: justify;">In this seminar we will present our methodology of unleashing the potential of GPU computing in legacy Fortran codes: to what degree the source code has to be modified to become usable on GPUs, how to turn single-threaded Fortran code into multi-threaded ensemble, how to pack all code into single GPU kernel to minimize synchronization stalls, how to map small loops onto parallel threads with custom directives and LLVM/NVVM, how to retain the preferred Fortran formatted outputs and other questions. …”
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“…Throughout the book, you’ll explore relevant material gleaned from numerous books, papers, blog posts, and the source code of several open source databases. These resources are listed at the end of parts one and two. …”
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