“…This compiler and model allows to execute program instances in parallel, and allows to use exploit the SIMD lanes of CPUs using GPU-like source code, without the need of low-level details knowledge. …”
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“…The realistic use cases of functionality 2. The source code corresponding to a specific work package 3. …”
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“…In order to be vendor independent, we support CUDA, OpenCL, and HIP, and we maintain a common C++ source code that also runs on the CPU. We will give an overview of the global reconstruction and tracking strategy, a comparison of the performance on CPU and different GPU models. …”
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“…These issues are already known for a decade, but due to the complexity of software frameworks and billions of allocations for a single job, up until recently no efficient mechanism has been available to correlate these issues with source code lines. However, with the advent of the Big Data era, many tools and platforms are now available to do large scale memory profiling. …”
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“…AVAILABILITY AND IMPLEMENTATION: The source code is publicly available at https://github.com/canc1993/graces.…”
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“…In this article, we focus on the internal structure and general capabilities of pyGOMoDO and on how it can be useful for carrying out structural biology studies of GPCRs. RESULTS: The source code is freely available at https://github.com/rribeiro-sci/pygomodo under the Apache 2.0 license. …”
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“…AVAILABILITY AND IMPLEMENTATION: BAM track examples, tutorial, and GDC file access links are available at https://proteinpaint.stjude.org/bam/. Source code is available at https://github.com/stjude/proteinpaint.…”
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“…We present a framework and open-source code to automatically construct and analyze possible alloys and solid solutions from a set of existing experimental or calculated ordered compounds, without requiring additional metadata except crystal structure. …”
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“…AI4Green is a web-based application, available as open-source code and free to use. It offers the core functionality of an ELN, namely, the ability to store reactions securely and share them among different members of a research team. …”
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“…Tampering with the location evidence is discussed, as well as its detection. The source code to replicate the results and to apply the updated data to future evidence is available.…”
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“…AVAILABILITY AND IMPLEMENTATION: dadi-cli is implemented in Python and released under the Apache License 2.0. The source code is available at https://github.com/xin-huang/dadi-cli. dadi-cli can be installed via PyPI and conda, and is also available through Cacao on Jetstream2 https://cacao.jetstream-cloud.org/.…”
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“…ACT is developed for high-throughput batch processing of images collected from multiple samples and is available as an open-source code. Given its accuracy, speed, and accessibility, ACT is expected to be a fundamental tool in studying human and non-human amyloid intermediates, developing early disease stage diagnostics, and screening for antibodies that bind toxic and heterogeneous human amyloid aggregates.…”
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“…It can also generate one secondary structure diagram from an input protein structure of interest. The source code can be downloaded (https://github.com/ethanchen1301/SSDraw) and run locally for rapid structure generation, while a Google Colab notebook allows easy use.…”
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“…We achieve state-of-the-art improvements, both in overall fidelity and equity. The source code for CounterSynth is available at https://github.com/guilherme-pombo/CounterSynth.…”
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“…AVAILABILITY AND IMPLEMENTATION: The package aPEAR is implemented in R, published under the MIT open-source licence. The source code, documentation, and usage instructions are available on https://gitlab.com/vugene/aPEAR as well as on CRAN (https://CRAN.R-project.org/package=aPEAR).…”
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“…McDAPS runs in MATLAB, and is supported on MS Windows and MAC OS systems. The MATLAB source code is available at https://github.com/thuptimd/McDAPS.git.…”
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“…The method for the calculation of local feature enrichment uses test statistic based on the Hypergeometric Distribution applied genome-wide by using a sliding window approach and adopting the False Discovery Rate for controlling multiplicity. REEF software, source code and documentation are freely available at . …”
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“…The eProbalign web server and underlying Probalign source code is freely accessible at http://probalign.njit.edu…”
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“…The Medical Image Processing Group at the University of Pennsylvania has been developing (and distributing with source code) medical image analysis and visualization software systems for a long period of time. …”
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