“…AVAILABILITY AND IMPLEMENTATION: checkMyIndex is available free of charge at https://checkmyindex.pasteur.fr as an online, web-based R/Shiny application. The source code is available on GitHub at https://github.com/PF2-pasteur-fr/checkMyIndex.…”
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“…The new dataset has been made openly available for other researchers to use, along with the source code used to generate it.…”
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“…Three factors help to achieve this: a simple design using Python's data structures, extensive use of standard libraries, and profusely commented source code. This paper is an introduction to Draculab's architecture and philosophy. …”
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“…Doc2Hpo is freely available at https://impact2.dbmi.columbia.edu/doc2hpo/. The source code is available at https://github.com/stormliucong/doc2hpo for local installation for protected health data.…”
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“…AVAILABILITY AND IMPLEMENTATION: Source code and documentation are freely available under an MIT license on GitHub at https://github.com/lafita/tadoss. …”
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“…This holds true even if the source code or binaries of the tested algorithms are available. …”
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“…AVAILABILITY AND IMPLEMENTATION: Ordino is publicly available at https://ordino.caleydoapp.org. The source code is released at https://github.com/Caleydo/ordino under the Mozilla Public License 2.0. …”
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“…Consistent improvements in cell-type classification and biologically meaningful marker selection are achieved by applying SCMarker on various datasets in multiple tissue types, followed by a variety of clustering algorithms. The source code of SCMarker is publicly available at https://github.com/KChen-lab/SCMarker.…”
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“…Our software is released as open source code, and the data used for the experiments presented in this paper are also freely available.…”
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“…The program was implemented using Python with the TensorFlow framework, with source code and webserver available from http://liulab.csrc.ac.cn/decodeSAXS.…”
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“…Numerical results suggest that the newly developed fusion method achieves superior performance in public benchmarking. In addition, the source code will be released in the GitHub.…”
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“…We report an R package, intansv, which can integrate the predictions of multiple programs as well as annotate and visualize structural variations. The source code and the help manual of intansv is freely available at https://github.com/venyao/intansv and http://www.bioconductor.org/packages/devel/bioc/html/intansv.html.…”
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“…AVAILABILITY AND IMPLEMENTATION: The methplotlib command-line tool is written in Python3, is compatible with Linux, Mac OS and the MS Windows 10 Subsystem for Linux and released under the MIT license. The source code can be found at https://github.com/wdecoster/methplotlib and can be installed from PyPI and bioconda. …”
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“…AVAILABILITY AND IMPLEMENTATION: The open-source code is available in the repository https://github.com/nagornovys/Cancer_cell_evolution. …”
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“…It can be easily installed from source code or using stand-alone installers. CONTACT: mindaugas.margelevicius@bti.vu.lt SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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“…Executable binaries and visualization are freely available for Linux operating systems, the source code is licensed under General Public License version 3.…”
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“…AVAILABILITY AND IMPLEMENTATION: The source-code is freely available under a GNU general public license at https://github.com/cschmidtlab/croco. …”
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“…AVAILABILITY AND IMPLEMENTATION: Scirpy source code and documentation are available at https://github.com/icbi-lab/scirpy. …”
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“…A compiled version is available for downloading at https://github.com/pfred/pfred-gui/releases/tag/v1.0 as a java Jar file. The source code and the links for downloading the precompiled version can be found at https://github.com/pfred.…”
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“…Via model transformations, the corresponding source code is automatically generated from formalized models that can be created using a graphical domain-specific language. …”
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