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  1. 661
    “…AVAILABILITY AND IMPLEMENTATION: PhyloMatcher is easily installed as a Python package with pip, or as a standalone GUI application. PhyloMatcher source code and documentation are freely available at https://github.com/Lswhiteh/PhyloMatcher, the GUI application can be downloaded from the Releases page.…”
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    PhyloMatcher: a tool for resolving conflicts in taxonomic nomenclature
  2. 662
    “…The app, which requires no programming knowledge to operate, allows the user to collect all findings into a summary report downloadable directly from the app itself. The source code for the app is freely available on GitHub under an open‐source license (https://github.com/DotanOr/DataCheQC) and can also be accessed online (https://dotanor.shinyapps.io/DataCheQC/).…”
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    Improving pharmacometrics analysis efficiency using DataCheQC: An interactive, Shiny‐based app for quality control of pharmacometrics datasets
  3. 663
    “…DO-MS allows for interactive data display and generation of extensive reports, including publication of quality figures that can be easily shared. The source code is available at github.com/SlavovLab/DO-MS.…”
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    Data-Driven Optimization of DIA Mass Spectrometry by DO-MS
  4. 664
    por Ham, Kyung Pyo, Sael, Lee
    Publicado 2023
    “…AVAILABILITY AND IMPLEMENTATION: Source code available for download at https://github.com/Ajou-DILab/EM3P2.…”
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    Online Artículo Texto
    Evidential meta-model for molecular property prediction
  5. 665
    por Shah, Avi, Aneesha, Kodati, Sudhir, Nayak
    Publicado 2023
    “…Compiled .jar executables, source code, supplementary materials including the user manual, links to video tutorials, and all sample data are available through the URLS at availability.…”
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    SlimShadey: A manipulation tool for multiple sequence alignments
  6. 666
    por Guo, Yujie, Feng, Xiaowen, Li, Heng
    Publicado 2023
    “…AVAILABILITY AND IMPLEMENTATION: The source code is available at https://github.com/magspho/hifieval.…”
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    Evaluation of haplotype-aware long-read error correction with hifieval
  7. 667
    por Chen, Ethan A., Porter, Lauren L.
    Publicado 2023
    “…It can also generate one secondary structure diagram from an input protein structure of interest. The source code can be downloaded (https://github.com/ncbi/SSDraw) and run locally for rapid structure generation, while a Google Colab notebook allows easy use.…”
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    SSDraw: Software for generating comparative protein secondary structure diagrams
  8. 668
    “…AVAILABILITY AND IMPLEMENTATION: regioneReloaded is an R package released under an Artistic-2.0 License. The source code and documentation are freely available through Bioconductor: http://www.bioconductor.org/packages/regioneReloaded.…”
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    regioneReloaded: evaluating the association of multiple genomic region sets
  9. 669
    “…CONCLUSION: IBDWS population genetics analysis software is hosted at and documentation is available at . The source code has been made available on Source Forge at .…”
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    Isolation by distance, web service
  10. 670
    “…The program can be used online; open source code and supplementary information are available at .…”
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    FACT – a framework for the functional interpretation of high-throughput experiments
  11. 671
    por Huang, Bingding, Schroeder, Michael
    Publicado 2006
    “…A web server for LIGSITE(csc )and its source code is available at scoppi.biotec.tu-dresden.de/pocket.…”
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    LIGSITE(csc): predicting ligand binding sites using the Connolly surface and degree of conservation
  12. 672
    por Johnson, Olin, Liu, Jing
    Publicado 2006
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    A traveling salesman approach for predicting protein functions
  13. 673
    “…IntAct supports and encourages local installations as well as direct data submission and curation collaborations. IntAct source code and data are freely available from .…”
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    IntAct—open source resource for molecular interaction data
  14. 674
    por Noto, Keith, Craven, Mark
    Publicado 2006
    “…CONCLUSION: Structural aspects are an important part of CRMs, both in terms of interpreting them biologically and learning them accurately. Source code for our algorithm is available at:…”
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    A specialized learner for inferring structured cis-regulatory modules
  15. 675
    “…In addition to supporting ongoing research, SMD makes its source code fully and freely available to others under an Open Source license, enabling other groups to create a local installation of SMD. …”
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    The Stanford Microarray Database: implementation of new analysis tools and open source release of software
  16. 676
    “…Analysis tools based on these models are available on the internet as both web based applications and downloadable source code at http://atom.research.microsoft.com/bio/phylod.aspx.…”
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    Leveraging Hierarchical Population Structure in Discrete Association Studies
  17. 677
    por Kibbe, Warren A.
    Publicado 2007
    “…OligoCalc is available at http://basic.northwestern.edu/biotools/OligoCalc.html, with links to the full source code, usage patterns and statistics at that link as well.…”
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    OligoCalc: an online oligonucleotide properties calculator
  18. 678
    por Collins, Roy Eric, Rocap, Gabrielle
    Publicado 2007
    “…Bug tracking is provided, and the source code is open and accessible under the GNU Public License v.2, at http://code.google.com/p/repk. …”
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    REPK: an analytical web server to select restriction endonucleases for terminal restriction fragment length polymorphism analysis
  19. 679
    por Lancashire, Robert J
    Publicado 2007
    “…The development of the Java source code commenced under license in 2001 and was released as Open Source in March 2006. …”
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    The JSpecView Project: an Open Source Java viewer and converter for JCAMP-DX, and XML spectral data files
  20. 680
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    The Multiscale Systems Immunology project: software for cell-based immunological simulation
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