“…Documentation is available online (https://goo.gl/Klc51G), and source code is freely available via GitHub (https://github.com/BioCIDER). …”
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“…In summary, we have developed a new method for accurate and efficient prognosis prediction on high throughput data, with functional biological insights. The source code is freely available at https://github.com/lanagarmire/cox-nnet.…”
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“…AVAILABILITY AND IMPLEMENTATION: Data utilized are available at https://pubs.broadinstitute.org/diabimmune and with EBI SRA accession ERP005989. Source code is available at (https://github.com/kosticlab/aether). …”
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“…AVAILABILITY AND IMPLEMENTATION: GCV is provided under the GNU General Public License version 3 (GPL-3.0). Source code is available at https://github.com/legumeinfo/lis_context_viewer. …”
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“…It is available at www.oncogenetics.icr.ac.uk/LocusExplorer/ or can be installed locally and the source code accessed from https://github.com/oncogenetics/LocusExplorer. …”
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“…The simulation results and processed data for creating the source code are also provided on the database available at http://dx.doi.org/10.7910/DVN/1I6MKU.…”
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“…AVAILABILITY AND IMPLEMENTATION: SubRecon is platform independent, requiring Java v1.8 or above. Source code, installation instructions and an example dataset are freely available under the Apache 2.0 license at https://github.com/chrismonit/SubRecon.…”
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“…CRISPOR is available from http://crispor.org, including the full source code of the website and a stand-alone, command-line version.…”
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“…Results on several simulated datasets and transcriptional regulation networks indicate that sgip outperforms nauty on many graph cases. The source code of sgip is freely accessible in https://github.com/seqan/seqan/tree/master/apps/sgip and the binary code in http://packages.seqan.de/sgip/.…”
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“…SKESA has been used for assembling over 272,000 read sets in the Sequence Read Archive at NCBI and for real-time pathogen detection. Source code for SKESA is freely available at https://github.com/ncbi/SKESA/releases. …”
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“…It is implemented in Java (version ≥1.7 required) and the source code is provided at https://github.com/epilog-tool/epilog under a GNU General Public License v3.0.…”
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“…AVAILABILITY AND IMPLEMENTATION: VBT is implemented in C++ and source code is available under GNU GPLv3 license at the following URL: https://github.com/sbg/VBT-TrioAnalysis.git. …”
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“…Mozilla Firefox, Google Chrome, and Safari web browsers are supported. Source code is available under MIT license at https://github.com/davidjakubec/3DPatch. …”
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“…AVAILABILITY AND IMPLEMENTATION: Source code and documentation are available under the MIT license at https://github.com/HadrienG/InSilicoSeq and https://insilicoseq.readthedocs.io/. …”
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“…AVAILABILITY AND IMPLEMENTATION: FastSpar source code, precompiled binaries and platform packages are freely available on GitHub: github.com/scwatts/FastSpar SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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“…Prot-SpaM can be used to calculate high-quality phylogenetic trees for dozens of whole-proteome sequences in a matter of seconds or minutes and often outperforms other alignment-free approaches. The source code of our software is available through Github: https://github.com/jschellh/ProtSpaM.…”
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“…Extensive experiments conducted on the PolyU and CASIA multispectral databases demonstrate that the HELM scheme can achieve competitive results. The source code together with datasets involved in this paper can be available for free download at https://figshare.com/s/01aef7d48840afab9d6d.…”
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“…Through integration with third party codes, stk offers the user the opportunity to explore the potential energy landscape of the assembled supramolecule and then calculate the supramolecule's structural features and properties. stk provides support for high‐throughput screening of large batches of supramolecules at a time. The source code of the program can be found at https://github.com/supramolecular-toolkit/stk. © 2018 The Authors. …”
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“…AVAILABILITY: colocr is available on the comprehensive R archive network, and the source code is available on GitHub under the GPL-3 license as part of the ROpenSci collection, https://github.com/ropensci/colocr.…”
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“…AVAILABILITY AND IMPLEMENTATION: GREP is available at https://github.com/saorisakaue/GREP as a python source code. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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