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  1. 1041
    “…Raritas is written in Python and can be run as a standalone app for recent versions of either MacOS or Windows, or from the command line as easily customized source code. The program explicitly supports a rare category count mode which makes it easier to collect quantitative data on rare categories, for example, rare species which are important in biodiversity surveys. …”
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    Raritas: a program for counting high diversity categorical data with highly unequal abundances
  2. 1042
    “…These data, along with source code used in their analysis, are compiled in the NitrogenUptake2016 R package available from the Comprehensive R Archive Network.…”
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    Nitrogen and carbon concentrations and stable isotope ratios: Data from a (15)N tracer study in short-form Spartina alterniflora and Distichlis spicata
  3. 1043
    “…The test datasets and the complete source code of the developed software are now freely available at http://code.google.com/p/cmaterbioinfo/.…”
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    FunPred-1: Protein function prediction from a protein interaction network using neighborhood analysis
  4. 1044
    por Balli, Fabio
    Publicado 2018
    “…From the 6 prototypes, 3 were tested by 10 children during a prestudy. The source code of the games, of which 2 continue to be developed, has been released on the internet under fair use licenses. …”
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    Developing Digital Games to Address Airway Clearance Therapy in Children With Cystic Fibrosis: Participatory Design Process
  5. 1045
    “…It has been implemented in the Keras deep learning framework, and source code for the model and several examples is available online. …”
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    A scalable discrete-time survival model for neural networks
  6. 1046
    por Qiao, Lei, Wang, Yan
    Publicado 2019
    “…Effort-aware just-in-time (JIT) defect prediction is to rank source code changes based on the likelihood of detects as well as the effort to inspect such changes. …”
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    Effort-aware and just-in-time defect prediction with neural network
  7. 1047
    por Ahmed, Mahmoud, Kim, Deok Ryong
    Publicado 2019
    “…AVAILABILITY: cRegulome is available on the comprehensive R archive network (CRAN) and the source code is hosted on GitHub as part of the ROpenSci on-boarding collection, https://github.com/ropensci/cRegulome.…”
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    cRegulome: an R package for accessing microRNA and transcription factor-gene expression correlations in cancer
  8. 1048
    “…Together with the full hardware details, results and performance on a single volunteer participant (limited to alpha wave elicitation), we present the brain computer interface (BCI)2000 EEG source driver together with source code as well as the compiled (.exe). In addition, all the necessary device firmware, gerbers and bill of materials for the full reproducibility of the presented hardware is included. …”
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    Fully Open-Access Passive Dry Electrodes BIOADC: Open-Electroencephalography (EEG) Re-Invented
  9. 1049
    “…AVAILABILITY AND IMPLEMENTATION: Source code, demo data, and detailed documentation are freely available at https://github.com/JCVenterInstitute/PanGenomePipeline.…”
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    Large-scale comparative analysis of microbial pan-genomes using PanOCT
  10. 1050
    “…AVAILABILITY AND IMPLEMENTATION: Download links for the SanXoT Software Package, source code and documentation are available at https://wikis.cnic.es/proteomica/index.php/SSP. …”
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    SanXoT: a modular and versatile package for the quantitative analysis of high-throughput proteomics experiments
  11. 1051
    “…AVAILABILITY AND IMPLEMENTATION: Demonstrations and source code are hosted at (https://candi.nextgenhealthcare.org), and (https://github.com/mbadge/candi), respectively, under GPL-3 license. …”
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    CANDI: an R package and Shiny app for annotating radiographs and evaluating computer-aided diagnosis
  12. 1052
    por Hamid, Md-Nafiz, Friedberg, Iddo
    Publicado 2019
    “…AVAILABILITY AND IMPLEMENTATION: Data and source code for this project are freely available at: https://github.com/nafizh/NeuBI. …”
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    Identifying antimicrobial peptides using word embedding with deep recurrent neural networks
  13. 1053
    “…It can be run on most operating systems – including MacOS, Windows, and Linux – and integrated into high‐performance computing environments. The RadAA source code and executable binaries are freely available at https://github.com/sciseim/RadAA.…”
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    RadAA: A Command‐line Tool for Identification of Radical Amino Acid Changes in Multiple Sequence Alignments
  14. 1054
    “…AVAILABILITY AND IMPLEMENTATION: PAVOOC is available under https://pavooc.me and accessible using modern browsers (Chrome/Chromium recommended). The source code is hosted at github.com/moritzschaefer/pavooc under the MIT License. …”
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    PAVOOC: designing CRISPR sgRNAs using 3D protein structures and functional domain annotations
  15. 1055
    “…AVAILABILITY AND IMPLEMENTATION: Source code and installation manual for cloudSPAdes are available at https://github.com/ablab/spades/releases/tag/cloudspades-paper. …”
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    cloudSPAdes: assembly of synthetic long reads using de Bruijn graphs
  16. 1056
    “…AVAILABILITY AND IMPLEMENTATION: Drug Targetor v1.21 is a web application freely available online at drugtargetor.com and under MIT licence. The source code can be found at https://github.com/hagax8/drugtargetor. …”
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    Drug Targetor: a web interface to investigate the human druggome for over 500 phenotypes
  17. 1057
    “…We also share open source code for several custom applications and document how GEM-NET can benefit users in multiple fields and teams that are both small and large. …”
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    GEM-NET: Lessons in Multi-Institution Teamwork Using Collaboration Software
  18. 1058
    “…The current mainstream open source software vulnerability analysis technology is based on source code, and there are problems such as false positives, false negatives and restatements. …”
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    Open source software security vulnerability detection based on dynamic behavior features
  19. 1059
    “…We publicly release a set of 23,165 manually annotated nuclei and source code to reproduce experiments and run the proposed evaluation methodology. …”
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    Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images
  20. 1060
    “…AVAILABILITY AND IMPLEMENTATION: CytoBackBone is implemented in R and the source code is available at https://github.com/tchitchek-lab/CytoBackBone. …”
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    CytoBackBone: an algorithm for merging of phenotypic information from different cytometric profiles
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