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  1. 1061
    “…AVAILABILITY AND IMPLEMENTATION: The ORCA Docker image is available at https://hub.docker.com/r/bcgsc/orca/. The source code of ORCA is available at https://github.com/bcgsc/orca under the MIT license.…”
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    ORCA: a comprehensive bioinformatics container environment for education and research
  2. 1062
    “…AVAILABILITY AND IMPLEMENTATION: FuncTree2 is freely available at https://bioviz.tokyo/functree2/ as a web application and a REST API. Source code is available on GitHub https://github.com/yamada-lab/functree-ng. …”
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    FuncTree2: an interactive radial tree for functional hierarchies and omics data visualization
  3. 1063
    “…PCAViz will appeal to a broad audience of researchers and educators. The source code is available at http://durrantlab.com/pcaviz/, and the WordPress plugin is available via the official WordPress Plugin Directory.…”
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    PCAViz: An Open-Source Python/JavaScript Toolkit for Visualizing Molecular Dynamics Simulations in the Web Browser
  4. 1064
    “…AVAILABILITY AND IMPLEMENTATION: GeneNoteBook is implemented as a node.js web application and depends on MongoDB and NCBI BLAST. Source code is available at https://github.com/genenotebook/genenotebook. …”
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    GeneNoteBook, a collaborative notebook for comparative genomics
  5. 1065
    “…This paper accompanies the source code for the robotics community.…”
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    ACK-MSCKF: Tightly-Coupled Ackermann Multi-State Constraint Kalman Filter for Autonomous Vehicle Localization
  6. 1066
    “…After making some modifications to the source code for GENESIS and its parallel implementation, PGENESIS, particularly to improve memory usage, we find that PGENESIS is able to efficiently scale on supercomputing resources to network sizes as large as 9 × 10(6) neurons with 18 × 10(9) synapses and 2.2 × 10(6) neurons with 45 × 10(9) synapses. …”
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    Enabling Large-Scale Simulations With the GENESIS Neuronal Simulator
  7. 1067
    por Ahmed, Mahmoud, Kim, Deok Ryong
    Publicado 2019
    “…In addition, the packages document the source code of the data collection and the pre-processing pipelines. …”
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    Modelling the gene expression and the DNA-binding in the 3T3-L1 differentiating adipocytes
  8. 1068
    “…We also investigate the impact of numerical variables as well as handling of categorical variables on each of the defined tasks. The source code, detailing our methods and experiments is publicly available such that anyone can replicate our results and build upon our work.…”
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    Benchmarking machine learning models on multi-centre eICU critical care dataset
  9. 1069
    “…AVAILABILITY AND IMPLEMENTATION: The source code and datasets created and used in this research are available at https://github.com/eukaryo/czno. …”
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    Finding the direct optimal RNA barrier energy and improving pathways with an arbitrary energy model
  10. 1070
    por Devaraj, Vimalathithan, Bose, Biplab
    Publicado 2020
    “…A GUI of DEBay and its source code are available for download at SourceForge (https://sourceforge.net/projects/debay).…”
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    DEBay: A computational tool for deconvolution of quantitative PCR data for estimation of cell type-specific gene expression in a mixed population
  11. 1071
    “…Moreover, the VisTCR provides a user-friendly interactive interface, by all the TCR analysis methods and visualization results can be accessed and saved as tables or graphs in the process of analysis. The source code is freely available at https://github.com/qingshanni/VisTCR.…”
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    VisTCR: An Interactive Software for T Cell Repertoire Sequencing Data Analysis
  12. 1072
    “…Hooking is an important technique for protecting Android applications and add security features to them even without its source code. Various hooking frameworks are developed to intercept events and process their own specific events. …”
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    An Android Inline Hooking Framework for the Securing Transmitted Data
  13. 1073
    “…It automatically checks safety properties in C programs by adopting source code instrumentation to monitor data (e.g., memory pointers) from the program’s executions using LLVM compiler infrastructure. …”
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    Map2Check: Using Symbolic Execution and Fuzzing: (Competition Contribution)
  14. 1074
    por Kim, Wan, Yoon, Sung Min, Kim, Sangsoo
    Publicado 2020
    “…Gene Ontology analysis was congruent with the annotated cell type and the corollary regulatory network analysis showed upstream transcription factors that have well supported literature evidences. The source code is available as an R script upon request.…”
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    A semi-automatic cell type annotation method for single-cell RNA sequencing dataset
  15. 1075
    “…Moreover, the low computational cost also brings about a compact hardware implementation capable of handling high-quality videos at an acceptable rate, that is, greater than 25 frames per second, as verified with a Field Programmable Gate Array chip. The software source code and datasets are available online for public use.…”
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    Single Image Haze Removal from Image Enhancement Perspective for Real-Time Vision-Based Systems
  16. 1076
    “…AVAILABILITY AND IMPLEMENTATION: Source code and documentation are openly available at https://bitbucket.org/anthakki/qsne/. …”
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    qSNE: quadratic rate t-SNE optimizer with automatic parameter tuning for large datasets
  17. 1077
    “…This combination makes it especially suitable to be integrated into production NGS pipelines. Source code and documentation are available at https://www.github.com/babelomics/SMAca.…”
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    SMN1 copy‐number and sequence variant analysis from next‐generation sequencing data
  18. 1078
    “…An easy-to-run Python source code is provided to illustrate the establishment of the ITC measurement model and the estimation of heat variances. …”
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    Estimation of non-constant variance in isothermal titration calorimetry using an ITC measurement model
  19. 1079
    “…A series of experimental results show that 6mA-Pred is an excellent method. We provide the source code used in the study, which can be obtained from http://39.100.246.211:5004/6mA_Pred/.…”
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    6mA-Pred: identifying DNA N6-methyladenine sites based on deep learning
  20. 1080
    por García-Sosa, Alfonso T.
    Publicado 2021
    “…Techniques of this type may improve AR and toxicity description and prediction, improving assessment and design of compounds. Source code and data are available on github.…”
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    Androgen Receptor Binding Category Prediction with Deep Neural Networks and Structure-, Ligand-, and Statistically Based Features
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