“…AVAILABILITY AND IMPLEMENTATION: struct and structToolbox are implemented in R, and are freely available from Bioconductor (http://bioconductor.org/packages/struct and http://bioconductor.org/packages/structToolbox), including documentation and vignettes. Source code is available and maintained at https://github.com/computational-metabolomics.…”
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“…AVAILABILITY AND IMPLEMENTATION: SVIM-asm has been implemented in Python and can be easily installed via bioconda. Its source code is available at github.com/eldariont/svim-asm. …”
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“…We apply our model to synthetic store and shopping data to show how one can use our model to estimate exposure time and thereby the number of infections due to human-to-human contact in stores and how to model different store interventions. The source code is openly available under https://github.com/fabianying/covid19-supermarket-abm. …”
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“…We also release the source code publicly: https://github.com/ZJUYH/radar-to-lidar-place-recognition.…”
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“…It can be accessed free of charge, without registration, at http://durrantlab.com/deepfrag. The source code is also available at http://git.durrantlab.com/jdurrant/deepfrag-app, released under the terms of the open-source Apache License, Version 2.0.…”
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“…PyBindingCurve is available under the MIT license at https://github.com/stevenshave/pybindingcurve as the Python source code accompanied by examples and as an easily installable package within the Python Package Index.…”
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“…The proposed model, algorithm, and source code for modeling and simulation are validated by measurement using spherical glass beads, and acceptable agreement is obtained. …”
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“…For better usage, we provide the Docker version and the web service of TSNAD v2.0. The source code of TSNAD v2.0 is freely available at https://github.com/jiujiezz/tsnad. …”
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“…An extensive documentation including the list of modules, various tutorials and link to the source code is available at https://imagej.net/TAPAS.…”
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“…AVAILABILITY AND IMPLEMENTATION: Compartor is provided as a Python package and is available at https://pypi.org/project/compartor/. Source code and usage tutorials for Compartor are available at https://github.com/zechnerlab/Compartor.…”
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“…AVAILABILITY AND IMPLEMENTATION: Mutalyzer is an Open Source project under the GNU Affero General Public License. The source code is available on GitHub (https://github.com/mutalyzer/mutalyzer) and a running instance is available at: https://mutalyzer.nl…”
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“…Experimental results show significant and consistent improvement also in practice. Open source code is provided.…”
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“…AVAILABILITY AND IMPLEMENTATION: Package manager: https://anaconda.org/bioconda/mbg and source code: https://github.com/maickrau/MBG. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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“…AVAILABILITY AND IMPLEMENTATION: The eCOMPASS executable, C++ open source code and input data sets are available at https://www.igs.umaryland.edu/labs/neuwald/software/compass SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.…”
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“…The complete list of all the available API endpoints and their descriptions are available at https://pdbe.org/graph-api. The source code of the Python 3.6+ API application is publicly available at https://gitlab.ebi.ac.uk/pdbe-kb/services/pdbe-graph-api. …”
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“…Extensive benchmarking tests demonstrated that Staem5 outperformed state-of-the-art approaches in both cross-validation and independent tests. We provide the source code of Staem5, which is publicly available at https://github.com/Cxd-626/Staem5.git.…”
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“…The basic idea is to collect a large pool of available source code, extract the common code patterns, and utilize the patterns for recommendations. …”
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“…Simulation results suggest that DTFLOW has superior accuracy and strong robustness properties for constructing pseudotime trajectories. The Python source code of DTFLOW can be freely accessed at https://github.com/statway/DTFLOW.…”
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“…These calculations have several downstream applications, such as evolutionary studies and phage–host predictions. The source code is freely available, and the website is hosted at www.cbdb.info.…”
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“…Storage and processing of the data are performed via the versatile Galaxy platform (through SearchGUI, PeptideShaker, and moFF), while the interaction with the results happens via a locally installed web server, thus enabling researchers to process and interpret their own data without requiring advanced bioinformatics skills or direct access to compute-intensive infrastructures. The source code, additional documentation, and a fully functional demo is available at https://github.com/barsnes-group/peptide-shaker-online.…”
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