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  1. 1281
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    Modular and configurable optimal sequence alignment software: Cola
  2. 1282
    “…AVAILABILITY: The tool and source code of PPS-CBM is available at http://keralabs.org…”
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    A novel sequence and context based method for promoter recognition
  3. 1283
    “…The official web site and installer are located at http://www.degradolab.org/suns/ and the source code is hosted at https://github.com/godotgildor/Suns (PyMOL plugin, BSD license), https://github.com/Gabriel439/suns-cmd (command line client, BSD license), and https://github.com/Gabriel439/suns-search (search engine server, GPLv2 license).…”
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    A Real-Time All-Atom Structural Search Engine for Proteins
  4. 1284
    “…Availability and implementation: Source code is freely available as an R package from the Bioconductor Web site (http://www.bioconductor.org/), and more information is available at http://cbio.ensmp.fr/flipflop. …”
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    Efficient RNA isoform identification and quantification from RNA-Seq data with network flows
  5. 1285
    “…Availability and implementation: Source code and its documentation are available at http://bcfind.dinfo.unifi.it/. …”
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    Large-scale automated identification of mouse brain cells in confocal light sheet microscopy images
  6. 1286
    por Nevozhay, Dmitry
    Publicado 2014
    “…The current version of our program, Cheburator, together with sample data, source code, and documentation, is freely available at the following URL: http://www.cheburator.nevozhay.com (it is free for academic use, but a license is required for commercial use).…”
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    Cheburator Software for Automatically Calculating Drug Inhibitory Concentrations from In Vitro Screening Assays
  7. 1287
    “…It calculates iHS on chromosome 22 (22,147 loci) across 204 CEU haplotypes in 353 s on one thread (33 s on 16 threads) and calculates XPEHH for the same data relative to 210 YRI haplotypes in 578 s on one thread (52 s on 16 threads). Source code and binaries (Windows, OSX, and Linux) are available at https://github.com/szpiech/selscan.…”
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    selscan: An Efficient Multithreaded Program to Perform EHH-Based Scans for Positive Selection
  8. 1288
    “…Availability and implementation: The source code is freely available at http://www.biocomputing.it/H3Loopred/ Contact: anna.tramontano@uniroma1.it Supplementary Information: Supplementary data are available at Bioinformatics online.…”
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    Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies
  9. 1289
    “…The structure of the QuaCRS database is designed to enable expansion with additional tools and metrics in the future. The source code for not-for-profit use and a fully functional sample user interface with mock data are available at http://bioserv.mps.ohio-state.edu/QuaCRS/.…”
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    Quality Control for RNA-Seq (QuaCRS): An Integrated Quality Control Pipeline
  10. 1290
    “…MicrobeGPS is open source and available from https://sourceforge.net/projects/microbegps/ as source code and binary distribution for Windows and Linux operating systems.…”
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    Metagenomic Profiling of Known and Unknown Microbes with MicrobeGPS
  11. 1291
    “…Binary executables are available at http://sourceforge.net/projects/hitselect/, and the source code is available at https://github.com/diazlab/HiTSelect.…”
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    HiTSelect: a comprehensive tool for high-complexity-pooled screen analysis
  12. 1292
    “…The executable binaries and the standalone C++ source code package of PEAT are freely available online.…”
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    PEAT: an intelligent and efficient paired-end sequencing adapter trimming algorithm
  13. 1293
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    LocusTrack: Integrated visualization of GWAS results and genomic annotation
  14. 1294
    “…ProGeRF (Proteome and Genome Repeat Finder) is freely available as a stand-alone program, from which the users can download the source code, and as a web tool. It was developed using the hash table approach to extract perfect and imperfect repetitive regions in a (multi)FASTA file, while allowing a linear time complexity.…”
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    ProGeRF: Proteome and Genome Repeat Finder Utilizing a Fast Parallel Hash Function
  15. 1295
    “…When compared to a recent dedicated method, which is not compatible with some data sets, the compression gain of MAFCO is about 9%. Both source-code and binaries for several operating systems are freely available for non-commercial use at: http://bioinformatics.ua.pt/software/mafco.…”
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    MAFCO: A Compression Tool for MAF Files
  16. 1296
    “…MDAT is coded in C++, and the source code is freely available for download at http://www.bornberglab.org/pages/mdat. …”
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    MDAT- Aligning multiple domain arrangements
  17. 1297
    “…CONCLUSIONS: Calculation of the estimated distribution over methylation patterns is implemented in the R Bioconductor package MPFE. Source code and documentation of the package are also available for download at http://bioconductor.org/packages/3.0/bioc/html/MPFE.html. …”
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    Estimation of the methylation pattern distribution from deep sequencing data
  18. 1298
    “…Both the program and source code are available to download from http://www.cancer.manchester.ac.uk/MultiElec/.…”
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    MultiElec: A MATLAB Based Application for MEA Data Analysis
  19. 1299
    “…Availability and implementation: The web interface of forna is available at http://rna.tbi.univie.ac.at/forna while the source code is available on github at www.github.com/pkerpedjiev/forna. …”
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    Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams
  20. 1300
    “…HS-BLASTN is written in C++ and the related source code is available at https://github.com/chenying2016/queries under the GPLv3 license.…”
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    High speed BLASTN: an accelerated MegaBLAST search tool
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