“…The developed prediction models can be used for determining highly interacting proteins in the four studied species to assist future proteomics experiments and PIN analyses. AVAILABILITY: The source code and executable program of the hub classifier are available for download at: http://www.cnbi2.ca/hub-analysis/…”
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“…Availability and implementation: BEDTools was written in C++. Source code and a comprehensive user manual are freely available at http://code.google.com/p/bedtools Contact: aaronquinlan@gmail.com; imh4y@virginia.edu Supplementary information: Supplementary data are available at Bioinformatics online.…”
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“…This software is freely available as source code from http://bioinf.cs.ucl.ac.uk/memsat/mempack/.…”
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“…We show that the ANMM4CBR method performs better than some state-of-the-art methods such as support vector machine (SVM) and k nearest neighbor (kNN), especially when the data contains a high level of noise. AVAILABILITY: The source code is attached as an additional file of this paper.…”
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“…Here we present CloneQC, a lightweight software pipeline available as a free web server and as source code that performs quality control on sequenced clones. …”
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“…The training datasets, precompiled binaries for AMS 3.0 tool and the source code are available at http://code.google.com/p/automotifserver under the Apache 2.0 license scheme.…”
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“…We identify several limitations of the current ontologies that still need to be addressed to ensure a consistent and complete representation of anatomical functions and their abnormalities. AVAILABILITY: The source code and results of our analysis are available at http://bioonto.de.…”
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“…CONCLUSIONS: Our framework enables biomedical image software development to be built with 3D visualization capabilities with very little effort. We offer the source code and convenient binary packages along with extensive documentation at http://3dviewer.neurofly.de.…”
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“…Availability: Executables, source code, and sample data are available at http://solidsoftwaretools.com/gf/project/socs/ Contact: bergmann@nbacc.net Supplementary information: Supplementary data are available at Bioinformatics online.…”
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“…CONCLUSIONS: The NMF package helps realize the potential of Nonnegative Matrix Factorization, especially in bioinformatics, providing easy access to methods that have already yielded new insights in many applications. Documentation, source code and sample data are available from CRAN.…”
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“…Single plots are generated in ∼20 s. Source code and associated databases are available for download and local installation, and full documentation is available online. …”
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“…Availability: Implemented in Java, PathwayAccess plugins run with CellDesigner version 4.0.1 and were tested on Ubuntu Linux, Windows XP and 7, and MacOSX. Source code, binaries, documentation and video walkthroughs are freely available at http://vrac.iastate.edu/∼jlv Contact: julied@iastate.edu Supplementary information: Supplementary data are available at Bioinformatics online.…”
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“…Availability: A sample source code is available at the URL http://daweb.ism.ac.jp/∼yoshidar/lisdas/ Contact: yoshidar@ism.ac.jp…”
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“…Several applications, such as the latest versions of IPLT and QMean, have been implemented based on OpenStructure—demonstrating its value for the development of next-generation structural biology algorithms. Availability: Source code licensed under the GNU lesser general public license and binaries for MacOS X, Linux and Windows are available for download at http://www.openstructure.org. …”
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“…It improves t-test, rank product, and fold change by 11% to 50% in the numbers of identified true differentially expressed genes. The source code of DB pruning is freely available on our website http://mleg.cse.sc.edu/degprune…”
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“…Availability and Implementation: A web user interface is available at http://www.rcsb.org/pdb/workbench/workbench.do. The source code is available under the LGPL license from http://www.biojava.org. …”
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“…More information and source code is available via http://www.bioinformaticslaboratory.nl/…”
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