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  1. 1561
    “…Availability: All documentation and source code for the HAL API and tools are freely available at http://github.com/glennhickey/hal. …”
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    HAL: a hierarchical format for storing and analyzing multiple genome alignments
  2. 1562
    “…Availability and implementation: Source code, binaries and documentation are available on http://rega.kuleuven.be/cev/regadb. …”
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    RegaDB: community-driven data management and analysis for infectious diseases
  3. 1563
    “…CellH5 provides new opportunities for integrated data analysis by multiple software platforms. Availability: Source code is freely available at www.github.com/cellh5 under the GPL license and at www.bioconductor.org/packages/release/bioc/html/rhdf5.html under the Artistic-2.0 license. …”
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    CellH5: a format for data exchange in high-content screening
  4. 1564
    por McClymont, Kent, Soyer, Orkun S.
    Publicado 2013
    “…The same website also provides the source code for Metabolic Tinker, allowing it to be developed further or run on personal machines for specific applications.…”
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    Metabolic tinker: an online tool for guiding the design of synthetic metabolic pathways
  5. 1565
    por Riniker, Sereina, Landrum, Gregory A
    Publicado 2013
    “…The open-source platform contains all source code, structural data for the actives and inactives used (drawn from three publicly available collections of data sets), and lists of randomly selected query molecules to be used for statistically valid comparisons of methods. …”
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    Open-source platform to benchmark fingerprints for ligand-based virtual screening
  6. 1566
    “…A web server implementing this discovery pipeline is available at http://csb.cs.mcgill.ca/sparcs together with the source code of the sampling algorithm.…”
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    SPARCS: a web server to analyze (un)structured regions in coding RNA sequences
  7. 1567
    “…We have developed an effective automated method which removes a substantial number of unwanted noisy components in ICA analyses of resting-state fMRI data. Source code of our implementation of the method is available.…”
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    An Automated Method for Identifying Artifact in Independent Component Analysis of Resting-State fMRI
  8. 1568
    “…Database URL: BioDIG website: http://biodig.org BioDIG source code repository: http://github.com/FriedbergLab/BioDIG The MyDIG database: http://mydig.biodig.org/…”
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    Biological Database of Images and Genomes: tools for community annotations linking image and genomic information
  9. 1569
    “…Availability: PiHelper is a free software under the GNU Lesser General Public License (LGPL) v3.0. Source code and documentation are at http://bit.ly/pihelper. …”
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    PiHelper: an open source framework for drug-target and antibody-target data
  10. 1570
    “…The information about source code, Amazon machine images and instructions on how to install and run DRAW+SneakPeek locally and on Amazon elastic compute cloud is available at the National Institute on Aging Genetics of Alzheimer’s Disease Data Storage Site (http://www.niagads.org/) and Wang lab Web site (http://wanglab.pcbi.upenn.edu/). …”
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    DRAW+SneakPeek: Analysis workflow and quality metric management for DNA-seq experiments
  11. 1571
    “…Availability: Toolbox ‘NearOED’ available with source code under GPL on the Machine Learning Open Source Software Web site (mloss.org). …”
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    Near-optimal experimental design for model selection in systems biology
  12. 1572
    “…Availability and implementation: Source code, binaries for Linux and MacOSX, and an interactive web server are available at http://swissmodel.expasy.org/lddt Contact: torsten.schwede@unibas.ch Supplementary information: Supplementary data are available at Bioinformatics online.…”
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    lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests
  13. 1573
    “…Therefore, the PD5 software library is published under the terms of the GNU General Public License, which guarantee access to source-code and allow redistribution and modification. …”
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    PD5: A General Purpose Library for Primer Design Software
  14. 1574
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    MEGADOCK 3.0: a high-performance protein-protein interaction prediction software using hybrid parallel computing for petascale supercomputing environments
  15. 1575
    por Pinho, Armando J., Pratas, Diogo
    Publicado 2014
    “…Availability: Both source code and binaries for several operating systems are freely available for non-commercial use at http://bioinformatics.ua.pt/software/mfcompress/. …”
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    MFCompress: a compression tool for FASTA and multi-FASTA data
  16. 1576
    “…Empirical studies on synthetic samples and applications using several ChIP data sets including 16 TF (transcription factor) ChIP-seq data sets and five TF ChIP-exo data sets have demonstrated that our proposed method is capable of finding these motifs with high efficiency and accuracy. The source code for FMotif is available at http://211.71.76.45/FMotif/.…”
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    A New Exhaustive Method and Strategy for Finding Motifs in ChIP-Enriched Regions
  17. 1577
    por Jiang, Peng, Singh, Mona
    Publicado 2014
    “…All generated data as well as source code for our front-to-end pipeline are available at http://cat.princeton.edu.…”
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    CCAT: Combinatorial Code Analysis Tool for transcriptional regulation
  18. 1578
    “…Availability and implementation: Source code for the BigWig, BigBed and Genome Browser software is freely available for non-commercial use at http://hgdownload.cse.ucsc.edu/admin/jksrc.zip, implemented in C and supported on Linux. …”
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    Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser
  19. 1579
    “…The acquisition of images does not require any specialised equipment and the computer routines for image processing and data analysis have been implemented using open source software. Source code for data analysis is written using the R package. …”
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    Objective Definition of Rosette Shape Variation Using a Combined Computer Vision and Data Mining Approach
  20. 1580
    “…AVAILIABILITY: The MOIRAI source code is freely available at http://sourceforge.net/projects/moirai/.…”
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    MOIRAI: a compact workflow system for CAGE analysis
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