“…Availability and implementation: Pipasic source code is freely available from https://sourceforge.net/projects/pipasic/. …”
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“…Availability and implementation: kmacs is implemented in C++, and the source code is freely available at http://kmacs.gobics.de/ Contact: chris.leimeister@stud.uni-goettingen.de Supplementary information: Supplementary data are available at Bioinformatics online.…”
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“…We found that RepeatMasker is more accurate than PClouds, Augustus has the lowest false-positive rate of the coding gene prediction programs tested, and Infernal has a low false-positive rate for non-coding gene detection. A web service, source code and the models for human and many other species are freely available at http://repeatmasker.org/garlic/.…”
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“…CONCLUSIONS: We believe that MORT can be used as a foundational library for programmers to develop new programs and applications for computational biology and CADD. Source code of MORT is available at http://cadd.suda.edu.cn/MORT/index.htm.…”
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“…All the inserted sequences were validated with a reference genome using QUAST. The source code and a web tool are available at http://www.bioinfo.ufpr.br/fgap/.…”
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“…A registry has been set up that categorises and provides installation instructions and testing facilities at http://www.ebi.ac.uk/tools/biojs/. The source code for all components is available for ready use at https://github.com/biojs/biojs.…”
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“…Availability and implementation: The software relax is written in Python with C modules and is released under the GPLv3+ license. Source code and precompiled binaries for all major operating systems are available from http://www.nmr-relax.com. …”
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“…Availability and implementation: Source code and datasets are available on request. Contact: torsten.schwede@unibas.ch Supplementary Information: Supplementary data are available at Bioinformatics online.…”
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“…Availability and implementation: The C++ source code for the algorithms and simulations described in the article are available at http://www-ens.iro.umontreal.ca/~lafonman/software.php. …”
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“…Database URL: http://www.wholecellsimdb.org Source code repository URL: http://github.com/CovertLab/WholeCellSimDB…”
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“…Availability and implementation: Cloud4Psi is available as Software as a Service for testing purposes at: http://cloud4psi.cloudapp.net/. For source code and software availability, please visit the Cloud4Psi project home page at http://zti.polsl.pl/dmrozek/science/cloud4psi.htm. …”
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“…Availability and implementation: Source code is freely available for download at http://lobstah.bu.edu/BitPAl/BitPAl.html. …”
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“…A public release of DCE@urLAB, together with the open source code and sample datasets, is available at http://www.die.upm.es/im/archives/DCEurLAB/.…”
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“…Availability and implementation: Source code is available at http://github.com/biolab/red. …”
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“…Using genome sequence data from HIV-1, Arabidopsis thaliana, Homo sapiens and Zea mays for comparison, detectIR can find lots of inverted repeats missed by existing tools whose outputs often contain many invalid cases. detectIR is open source and its source code is freely available at: https://sourceforge.net/projects/detectir.…”
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“…This resource is open source and the source code is available at https://github.com/maglab/naked-mole-rat-portal. …”
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“…Availability and implementation: Poretools is an open-source software and is written in Python as both a suite of command line utilities and a Python application programming interface. Source code is freely available in Github at https://www.github.com/arq5x/poretools Contact: n.j.loman@bham.ac.uk and aaronquinlan@gmail.com Supplementary information: An IPython notebook demonstrating the functionality of poretools is in Github. …”
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“…Unix, Windows, and MacOs versions are provided, as well as the source code for easier pipeline implementations.…”
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“…Both packages are available as publicly-accessible source-code repositories.…”
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