“…We trained and tested deep learning models on Cryo2Struct to make sure it is ready for the large-scale development of AI methods for reconstructing protein structures from cryo-EM density maps. The source code, data and instructions to reproduce our results are freely available at https://github.com/BioinfoMachineLearning/cryo2struct.…”
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“…ChroKit is a fast and intuitive genomic analysis tool suited for a wide range of users due to its architecture and its user-friendly graphical interface. ChroKit source code is available at https://github.com/ocroci/ChroKit and the Docker image at https://hub.docker.com/r/ocroci/chrokit.…”
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“…AVAILABILITY AND IMPLEMENTATION: The source code and data are freely available at https://github.com/luvyfdawnYu/CNV_chromothripsis.…”
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“…Through extensive experiments, we successfully demonstrate that the proposed algorithm outperforms some state-of-the-art methods. Our source code is publicly available at https://github.com/ixilai/ETEM.…”
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“…AVAILABILITY AND IMPLEMENTATION: Source code is freely available at https://github.com/X-lab-3D/GradPose; doi:10.5281/zenodo.7671922.…”
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“…The experimental results demonstrate that our proposed approach SRX-DTI achieves higher performance than other existing methods in predicting DTIs. The datasets and source code are available at: https://github.com/Khojasteh-hb/SRX-DTI.…”
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“…AVAILABILITY AND IMPLEMENTATION: The source code and data are available at https://github.com/TongXin-CASIA/EFSR.…”
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“…AVAILABILITY AND IMPLEMENTATION: The source code of ScHiCEDRN is available at the GitHub repository: https://github.com/BioinfoMachineLearning/ScHiCEDRN.…”
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“…AVAILABILITY AND IMPLEMENTATION: Source code is freely available at https://github.com/neurospin/netSGCCA…”
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“…Here, we present ion-to-image (i2i), which is a MATLAB-based application for MSI data acquired with continuous ionization sources, AGC, high resolution, and one or several scan filters. The source code and a compiled installer are available at https://github.com/LanekoffLab/i2i. …”
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“…CONCLUSIONS: HCCImm was equipped with a new set of reference gene expression profiles that allowed for a more robust analysis of HCC patient expression data. The source code is provided at https://github.com/holiday01/HCCImm.…”
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“…AVAILABILITY AND IMPLEMENTATION: The source code is available at https://github.com/Novartis/AEGIS.…”
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“…AVAILABILITY AND IMPLEMENTATION: The source code of XGDAG is available on GitHub at: https://github.com/GiDeCarlo/XGDAG. …”
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“…AVAILABILITY AND IMPLEMENTATION: The web server is available at www.cellann.io, and the source code is available at https://github.com/Pinlyu3/CellAnn_shinyapp.…”
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“…AVAILABILITY AND IMPLEMENTATION: Source code and datasets are available at https://github.com/linwang1982/NRFSE or https://codeocean.com/capsule/4741497/tree/v1.…”
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“…Experimental results on four benchmark datasets demonstrate that MpbPPI is a state-of-the-art framework for PPI [Formula: see text] predictions. The data and source code are available at https://github.com/arantir123/MpbPPI.…”
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“…Furthermore, sharing the source code of the data production process can contribute to better long-term data reproduction in the future.…”
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“…Commonly used models for analysis of whole slide images including segmentation, extraction of hand-engineered features for segmented regions, and slide-level classification using multi-instance learning are included and new models can be added as needed. The source code that supports running inference with these models internally is backed up by a robust CI/CD pipeline to ensure model versioning, robust testing, and seamless deployment of the latest models. …”
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“…CONCLUSIONS: These methods, for which open‐source code appropriate for high‐throughput automation is provided, improve on VLA by producing determinate measures of vein density as distributions rather than point estimates. …”
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“…Hence, it seems our method accelerates the performance of count over all state-of-the-art methods with a minor increase in the memory. The source code for PFP-FM is available at https://github.com/marco-oliva/afm.…”
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