“…Availability: The FastMap program and source code are available at the website: http://cebc.unc.edu/fastmap86.html Contact: iir@unc.edu; nobel@email.unc.edu Supplementary information: Supplementary data are available at Bioinformatics online.…”
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“…Implementation in code is straightforward; Java source code is available at www.celldynamics.org.…”
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“…Furthermore, we identified 131 protein domains within our analysed clones. The source code is freely available from our homepage at .…”
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“…Additionally, we apply our clustered alignment approach to characterize the effects of a conditional Mop3 knockout in mouse liver. Availability: Source code is available at http://www.biostat.wisc.edu/∼aasmith/catcode. …”
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“…The library analysis with S3T is freely available at . S3T source code and datasets can also be downloaded from the aforementioned website.…”
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“…All of the motif-based tools are now implemented as web services via Opal. Source code, binaries and a web server are freely available for noncommercial use at http://meme.nbcr.net.…”
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“…WebLab is publicly available at http://weblab.cbi.pku.edu.cn, with all source code released as Free Software.…”
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“…Availability: The R source code for differential variability analysis is available from the contact authors upon request. …”
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“…Availability: Our dataset, results and source code are available at http://compbio.cs.toronto.edu/structvar/ Contact:seunghak@cs.toronto.edu,echeran@cs.toronto.edu,brudno@cs.toronto.edu…”
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“…CONCLUSION: Practical experiments demonstrate that the matching task can be solved efficiently in practice, and that our method is both effective and useful for tracking cells in data sets derived from a so-called Large Scale Digital Cell Analysis System (LSDCAS). AVAILABILITY: The source code of the implementation is available for download from http://www.picb.ac.cn/patterns/Software/topaln.…”
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“…QUBIC was written in ANSI C and tested using GCC (version 4.1.2) on Linux. Its source code is available at: http://csbl.bmb.uga.edu/∼maqin/bicluster. …”
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“…Our approach is robust to alignment error and uncertainty and can be applied to a variety of biological datasets. The source code and documentation are publicly available for download from…”
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“…Besides, Kavosh can be employed for finding motifs of size greater than eight, while most of the other algorithms have restriction on motifs with size greater than eight. The Kavosh source code and help files are freely available at: .…”
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“…By analyzing the steady state profile of Hedgehog network, we were able to find the highly co-expressed gene pair GL1-SMO together with other such pairs. AVAILABILITY: Source code of this work is available at http://bioinformatics.cise.ufl.edu/palSteady.html twocolumnfalse]…”
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“…CONCLUSION: The hypothesis that more accurate alignments of distantly related sequences may be achieved using low-identity matrices is shown to be false for commonly used matrix types. Source code and test data is freely available from the author's web site at http://www.drive5.com/pop.…”
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“…Programmatic access to the database, along with source code and documentation, is available at http://microbesonline.org/programmers.html.…”
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“…The program is implemented in the D programming language using the Tango library. Source code and pre-compiled binaries are available at http://www.sanger.ac.uk/resources/software/cnd.html Contact: rd@sanger.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online.…”
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“…Meredys is a Free Software and the source code is available at http://meredys.sourceforge.net/.…”
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“…In benchmark tests, we show that our method, writher, improves accuracy over existing projection methods in terms of recognizing scop domains out of multi-domain proteins, while maintaining accuracy comparable with existing projection methods in a standard single-domain benchmark test. Availability: The source code is available at the following website: http://compbio.berkeley.edu/proj/writher/ Contact: dzhi@compbio.berkeley.edu Supplementary information: Supplementary data are available at Bioinformatics online.…”
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