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  1. 1901
    “…All materials, including source code and demos, are available on https://engineering.purdue.edu/PRECISE/SMDS.…”
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    Estimating view parameters from random projections for Tomography using spherical MDS
  2. 1902
    por Arnold, Christian, Stadler, Peter F
    Publicado 2010
    “…We then show that the general case of multifurcating trees can be treated by interleaving solutions to certain auxiliary Maximum Weighted Matching problems with an extension of this dynamic programming approach, resulting in an overall polynomial-time solution of complexity [Image: see text](n(4 )log n) w.r.t. the number n of leaves. The source code of a C implementation can be obtained under the GNU Public License from http://www.bioinf.uni-leipzig.de/Software/Targeting. …”
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    Polynomial algorithms for the Maximal Pairing Problem: efficient phylogenetic targeting on arbitrary trees
  3. 1903
    “…Availability and implementation: Binaries for the BigWig and BigBed creation and parsing utilities may be downloaded at http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/. Source code for the creation and visualization software is freely available for non-commercial use at http://hgdownload.cse.ucsc.edu/admin/jksrc.zip, implemented in C and supported on Linux. …”
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    BigWig and BigBed: enabling browsing of large distributed datasets
  4. 1904
    por Kwan, Phoenix, Birmingham, Amanda
    Publicado 2010
    “…Availability and implementation: NoiseMaker is written in C#, an ECMA and ISO standard language with compilers for multiple operating systems. Source code, a Windows installer and complete unit tests are available at http://sourceforge.net/projects/noisemaker. …”
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    NoiseMaker: simulated screens for statistical assessment
  5. 1905
    “…BALL is available as source code and binary packages from the project web site at http://www.ball-project.org. …”
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    BALL - biochemical algorithms library 1.3
  6. 1906
    “…Availability and implementation: RSEQtools is implemented in C and the source code is available at http://rseqtools.gersteinlab.org/. …”
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    RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries
  7. 1907
    “…CONCLUSIONS: Several experiments on datasets with different characteristics confirm that PicXAA-R is one of the fastest algorithms for structural alignment of multiple RNAs and it consistently yields accurate alignment results, especially for datasets with locally similar sequences. PicXAA-R source code is freely available at: http://www.ece.tamu.edu/~bjyoon/picxaa/.…”
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    PicXAA-R: Efficient structural alignment of multiple RNA sequences using a greedy approach
  8. 1908
    “…Availability and implementation: Source code is available under a BSD license from http://sourceforge.net/projects/text2genome/ and results can be browsed and downloaded at http://text2genome.org. …”
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    Annotating genes and genomes with DNA sequences extracted from biomedical articles
  9. 1909
    “…Availability and Implementation: FIMO is part of the MEME Suite software toolkit. A web server and source code are available at http://meme.sdsc.edu. Contact: t.bailey@imb.uq.edu.au; t.bailey@imb.uq.edu.au Supplementary information: Supplementary data are available at Bioinformatics online.…”
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    FIMO: scanning for occurrences of a given motif
  10. 1910
    “…Perl Scripts, Java source code and executables are available under an open source license for download at http://mayoresearch.mayo.edu/mayo/research/biostat/software.cfm…”
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    SNPPicker: High quality tag SNP selection across multiple populations
  11. 1911
    por Shi, Zhiao, Zhang, Bing
    Publicado 2011
    “…CONCLUSIONS: gpu-fan provides a significant performance improvement for centrality computation in large-scale networks. Source code is available under the GNU Public License (GPL) at http://bioinfo.vanderbilt.edu/gpu-fan/.…”
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    Fast network centrality analysis using GPUs
  12. 1912
    “…The software is freely available with source code at http://ccst.jlu.edu.cn/JCSB/RFET/.…”
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    Prediction of Drought-Resistant Genes in Arabidopsis thaliana Using SVM-RFE
  13. 1913
    “…PhyloMap is implemented in JAVA, and the source code is freely available at http://www.biochem.uni-luebeck.de/public/software/phylomap.html…”
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    PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus genome
  14. 1914
    “…The tool may also be installed locally using the open source code available at http://code.google.com/p/cdinfusion.…”
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    CDinFusion – Submission-Ready, On-Line Integration of Sequence and Contextual Data
  15. 1915
    “…This application is available free to anyone who is interested. Furthermore, its source code is made open.…”
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    A global travelers' electronic health record template standard for personal health records
  16. 1916
    “…Availability: Supplementary data and source code are available from http://www.ebi.ac.uk/fg/research/rex. …”
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    Data-driven information retrieval in heterogeneous collections of transcriptomics data links SIM2s to malignant pleural mesothelioma
  17. 1917
    “…Low mappability regions can be excluded from the analysis using provided mappability tracks. Availability: C++ source code is available at: http://bioinfo.curie.fr/projects/freec/ Contact: freec@curie.fr Supplementary information: Supplementary data are available at Bioinformatics online.…”
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    Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data
  18. 1918
    “…For these experiment types EPEPT first computes the permutation values and then performs the P-value estimation. Finally, the source code of EPEPT can be downloaded. CONCLUSIONS: Different types of users, such as biologists, bioinformaticians and software engineers, can use the method in an appropriate and simple way. …”
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    EPEPT: A web service for enhanced P-value estimation in permutation tests
  19. 1919
    “…The PHACTS software is open source and is available as downloadable stand-alone version or can be accessed online as a user-friendly web interface. The source code, help files and online version are available at http://www.phantome.org/PHACTS/. …”
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    PHACTS, a computational approach to classifying the lifestyle of phages
  20. 1920
    “…The algorithm is implemented in MATLAB along with a graphical user interface, and we have made the source code freely available.…”
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    Fast Retinal Vessel Detection and Measurement Using Wavelets and Edge Location Refinement
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