“…We therefore provide both the source code and the program as attachments to this article.…”
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“…TM-Coffee is part of the T-Coffee package, a web server is also available from http://tcoffee.crg.cat/tmcoffee and a freeware open source code can be downloaded from http://www.tcoffee.org/Packages/Stable/Latest.…”
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“…The ease of use, integration with many sequence retrieving and alignment tools and PyMOL, one of the most used molecular visualization system, are the key features of this tool. Source code, installation instructions, video tutorials and a user's guide are freely available at the URL http://schubert.bio.uniroma1.it/pymod/index.html…”
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“…A parallelized implementation of the proposed algorithm (EToS version 3) is available as open-source code at http://etos.sourceforge.net/.…”
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“…Detailed documentation and source code are available at the website.…”
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“…Our results suggest regulatory mechanisms for assembling the mitochondrial ribosome and illustrate dynamic changes in the components of the nuclear pore. Availability: All source code and data are available under the Boost Software License as supplementary material, at www.baderzone.org, and at sourceforge.net/projects/dhacdist Contact: joel.bader@jhu.edu Supplementary information: Supplementary data are available at Bioinformatics online.…”
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“…Although these results cannot be extrapolated to all microarray experiments, they highlighted the incidence of skew dispersion patterns in human transcriptome; moreover, we provided a new analytical approach to appropriately address this biological phenomenon. The source code of the program accommodating these analytical developments and additional information about practical aspects on running the program are freely available by request to the corresponding author of this article.…”
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“…The Cyber-T web server, with R source code and data sets, is publicly available at http://cybert.ics.uci.edu/.…”
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“…CONCLUSIONS: We conclude that the modified CV approach is an efficient method for analyzing large multi-gene datasets for plant DNA barcoding. Source code, implemented in C++ and supported on MS Windows, is freely available for download at http://math.xtu.edu.cn/myphp/math/research/source/Barcode_source_codes.zip.…”
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“…As such, the GMS should be considered in every resequencing project to pinpoint the ‘dark matter’ of the genome, including of known clinically relevant variations in these regions. Availability: The source code and profiles of several model organisms are available at http://gma-bio.sourceforge.net Contact: hlee@cshl.edu Supplementary Information: Supplementary data are available at Bioinformatics online.…”
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“…Availability and implementation: The MolClass webportal, software package and source code are freely available for non-commercial use at http://tyerslab.bio.ed.ac.uk/molclass. …”
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“…Provided that appropriate annotations exist, the proposed approach is easily applied to inferring other high level assignments like pathways. Availability: Source code under GPL license is available from the author. …”
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“…Availability: The method is implemented in MATLAB. Source code is available upon request. Contact: hongjie.zhu@duke.edu…”
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“…This software is freely available as source code from: http://bioinf.cs.ucl.ac.uk/downloads/memsat-svm/.…”
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“…The suite allows for easy download of both DelPhi executable files and source code along with a makefile for local installations. …”
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“…In addition to its performance on standard comparison databases, it utilizes clear, informative features, allowing further customization for domain-specific applications. The C++ source code for msTALI is available for Linux on the web at http://ifestos.cse.sc.edu/mstali.…”
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“…A manual, as well as the source code of the GraphPanel class can also be downloaded from this site.…”
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“…We implemented the method as a software package MitoCounter with the source code and user's guide available to the public at http://sourceforge.net/projects/mitocounter/.…”
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“…We also present experimental validation for LoFreq on two different platforms (Fluidigm and Sequenom) and its application to call rare somatic variants from exome sequencing datasets for gastric cancer. Source code and executables for LoFreq are freely available at http://sourceforge.net/projects/lofreq/.…”
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“…Applying our algorithm on various simulated data sets reveals good performance as we usually end up with a completely assembled genome, while keeping a low error rate. AVAILABILITY: All source code is available at http://www.iro.umontreal.ca/~mabrouk.…”
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