MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

por Wu, Yu-Wei, Tang, Yung-Hsu, Tringe, Susannah G, Simmons, Blake A, Singer, Steven W
Publicado 2014

Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations

por Bendall, Matthew L, Stevens, Sarah LR, Chan, Leong-Keat, Malfatti, Stephanie, Schwientek, Patrick, Tremblay, Julien, Schackwitz, Wendy, Martin, Joel, Pati, Amrita, Bushnell, Brian, Froula, Jeff, Kang, Dongwan, Tringe, Susannah G, Bertilsson, Stefan, Moran, Mary A, Shade, Ashley, Newton, Ryan J, McMahon, Katherine D, Malmstrom, Rex R
Publicado 2016

Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism

por Staley, Christopher, Ferrieri, Abigail P., Tfaily, Malak M., Cui, Yaya, Chu, Rosalie K., Wang, Ping, Shaw, Jared B., Ansong, Charles K., Brewer, Heather, Norbeck, Angela D., Markillie, Meng, do Amaral, Fernanda, Tuleski, Thalita, Pellizzaro, Tomás, Agtuca, Beverly, Ferrieri, Richard, Tringe, Susannah G., Paša-Tolić, Ljiljana, Stacey, Gary, Sadowsky, Michael J.
Publicado 2017

Ecophysiology of Freshwater Verrucomicrobia Inferred from Metagenome-Assembled Genomes

por He, Shaomei, Stevens, Sarah L. R., Chan, Leong-Keat, Bertilsson, Stefan, Glavina del Rio, Tijana, Tringe, Susannah G., Malmstrom, Rex R., McMahon, Katherine D.
Publicado 2017

Clades of huge phages from across Earth’s ecosystems

por Al-Shayeb, Basem, Sachdeva, Rohan, Chen, Lin-Xing, Ward, Fred, Munk, Patrick, Devoto, Audra, Castelle, Cindy J., Olm, Matthew R., Bouma-Gregson, Keith, Amano, Yuki, He, Christine, Méheust, Raphaël, Brooks, Brandon, Thomas, Alex, Lavy, Adi, Matheus-Carnevali, Paula, Sun, Christine, Goltsman, Daniela S. A., Borton, Mikayla A., Sharrar, Allison, Jaffe, Alexander L., Nelson, Tara C., Kantor, Rose, Keren, Ray, Lane, Katherine R., Farag, Ibrahim F., Lei, Shufei, Finstad, Kari, Amundson, Ronald, Anantharaman, Karthik, Zhou, Jinglie, Probst, Alexander J., Power, Mary E., Tringe, Susannah G., Li, Wen-Jun, Wrighton, Kelly, Harrison, Sue, Morowitz, Michael, Relman, David A., Doudna, Jennifer A., Lehours, Anne-Catherine, Warren, Lesley, Cate, Jamie H. D., Santini, Joanne M., Banfield, Jillian F.
Publicado 2020

Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber

por Hagen, Live H., Brooke, Charles G., Shaw, Claire A., Norbeck, Angela D., Piao, Hailan, Arntzen, Magnus Ø., Olson, Heather M., Copeland, Alex, Isern, Nancy, Shukla, Anil, Roux, Simon, Lombard, Vincent, Henrissat, Bernard, O’Malley, Michelle A., Grigoriev, Igor V., Tringe, Susannah G., Mackie, Roderick I., Pasa-Tolic, Ljiljana, Pope, Phillip B., Hess, Matthias
Publicado 2020

Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization

por Goren, Emily, Wang, Chong, He, Zhulin, Sheflin, Amy M., Chiniquy, Dawn, Prenni, Jessica E., Tringe, Susannah, Schachtman, Daniel P., Liu, Peng
Publicado 2021

Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons

por Qi, Mingsheng, Berry, Jeffrey C., Veley, Kira M., O’Connor, Lily, Finkel, Omri M., Salas-González, Isai, Kuhs, Molly, Jupe, Julietta, Holcomb, Emily, Glavina del Rio, Tijana, Creech, Cody, Liu, Peng, Tringe, Susannah G., Dangl, Jeffery L., Schachtman, Daniel P., Bart, Rebecca S.
Publicado 2022

Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages

por Albanese, Davide, Coleine, Claudia, Rota-Stabelli, Omar, Onofri, Silvano, Tringe, Susannah G., Stajich, Jason E., Selbmann, Laura, Donati, Claudio
Publicado 2021

Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans

por Duncan, Anthony, Barry, Kerrie, Daum, Chris, Eloe-Fadrosh, Emiley, Roux, Simon, Schmidt, Katrin, Tringe, Susannah G., Valentin, Klaus U., Varghese, Neha, Salamov, Asaf, Grigoriev, Igor V., Leggett, Richard M., Moulton, Vincent, Mock, Thomas
Publicado 2022