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301por Devani, Ravi Suresh, Sinha, Sangram, Banerjee, Jayeeta, Sinha, Rabindra Kumar, Bendahmane, Abdelhafid, Banerjee, Anjan Kumar“…The assembled transcriptome consisted of 467,233 ‘Trinity Transcripts’ clustering into 378,860 ‘Trinity Genes’. …”
Publicado 2017
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302“…The articles and topics were inspired by the Third Solar Image Processing Workshop, held at Trinity College Dublin, Ireland but contributions from other experts have been included as well. …”
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303Comprehensive Transcriptome Analysis of Response to Nickel Stress in White Birch (Betula papyrifera)“…Nickel resistant and susceptible genotypes were selected and used for transcriptome analysis. A total of 208,058 trinity genes were identified and were assembled to 275,545 total trinity transcripts. …”
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304“…Qualitative G6PD status and quantitative G6PD enzyme activity were determined using methaemoglobin reduction and Trinity Biotech G6PD test kit, respectively. Results. …”
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305por Lau, Maggie C. Y., Harris, Rachel L., Oh, Youmi, Yi, Min Joo, Behmard, Aida, Onstott, Tullis C.“…The results showed that these parameters varied considerably among the assemblies, with Trans-ABySS and Trinity generating the best assemblies for non-coding and coding RNA reads, respectively, because the high number of transcripts assembled covered a wide expression range, and captured extensively the taxonomic and metabolic gene diversity, respectively. …”
Publicado 2018
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306por Shu, Tong, Sun, Yanping, Bai, Yunlong, Lin, Xiangfang, Zhou, Ziping, Su, Lei, Zhang, Xueji“…Here, we fabricate a novel trinity fluorescent nanoprobe in which one small-molecule fluorophore, blue-emissive dityrosine (diTyr) residues, and two nanomaterial fluorophores, green-emissive CdS quantum dots (CdSQDs) and red-emissive gold nanoclusters (AuNCs), are cocaged in a bovine serum albumin (BSA) molecule. …”
Publicado 2020
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307por Breidenbach, Natalie, Sharov, Vadim V., Gailing, Oliver, Krutovsky, Konstantin V.“…The de novo transcriptome assembly generated by Trinity and CLC considering only reads with a minimum length of 180 bp and contigs no less than 200 bp long resulted in 634,772 and 788,464 unigenes (unique contigs), respectively.…”
Publicado 2020
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308por Oderda, Marco, Calleris, Giorgio, D’Agate, Daniele, Falcone, Marco, Faletti, Riccardo, Gatti, Marco, Marra, Giancarlo, Marquis, Alessandro, Gontero, Paolo“…Conclusions: Intraoperative 3D-TRUS-mpMRI modeling with Koelis Trinity is feasible and reliable, helping the surgeon to maximize functional outcomes without increasing the risk of positive surgical margins. …”
Publicado 2022
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310“…Seven program conditions, four single k-mer assemblers (SK: SOAPdenovo, ABySS, Oases and Trinity) and three multiple k-mer methods (MK: SOAPdenovo-MK, trans-ABySS and Oases-MK) were tested. …”
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311por Goo, Youn-Kyoung, Ji, So-Young, Shin, Hyun-Il, Moon, Jun-Hye, Cho, Shin-Hyung, Lee, Won-Ja, Kim, Jung-Yeon“…METHODS: Two commercialized test kits (Trinity G-6-PDH and CareStart G6PD test) were used for G6PD deficiency screening. …”
Publicado 2014
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312por Frischkorn, Kyle R., Harke, Matthew J., Gobler, Christopher J., Dyhrman, Sonya T.“…The de novo assemblies of pooled reads from all treatments reconstructed ~54,000 transcripts using Trinity, and ~31,000 transcripts using ABySS. Comparison to the strain CCMP 1984 genome showed that the majority of the gene models were present in both de novo assemblies and that roughly 95% of contigs from both assemblies mapped to the genome, with Trinity capturing slightly more genome content. …”
Publicado 2014
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313“…RESULTS: Transcriptome sequencing on the Ion Torrent PGM™ produced 1,883,624 raw reads with a mean length of 133 base pairs (bp). Both the Trinity and Oases de novo assemblers produced the best assemblies based on all quality metrics including fewer contigs, increased N50 and average contig length and contigs of greater length. …”
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314por Chopra, Ratan, Burow, Gloria, Farmer, Andrew, Mudge, Joann, Simpson, Charles E., Burow, Mark D.“…Also, on mapping the raw reads to each of the assemblies generated, Trinity had a high success rate in assembling sequences compared to both TransAByss and SOAPdenovo-Trans. …”
Publicado 2014
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315“…Approximately 300 million high-quality clean reads were generated and assembled into 207,827 (mean length = 828 bp) and 51,481 (mean length = 1250 bp) unigenes using two assembly methods named “Trinity” and “Trinity+PRICE”, respectively. Based on the data obtained by the latter method, 32,316 unigenes were annotated by BLAST against various databases. …”
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316por Sbragaglia, Valerio, Lamanna, Francesco, M. Mat, Audrey, Rotllant, Guiomar, Joly, Silvia, Ketmaier, Valerio, de la Iglesia, Horacio O., Aguzzi, Jacopo“…The cloning of assembled fragments validated Trinity outputs. The putative Nephrops clock genes showed high levels of identity (blastx on NCBI) with known crustacean clock gene homologs such as Eurydice pulchra (period: 47%, timeless: 59%, bmal1: 79%) and Macrobrachium rosenbergii (clock: 100%). …”
Publicado 2015
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317por Figueroa-Montiel, Andrea, Ramos, Marco A., Mares, Rosa E., Dueñas, Salvador, Pimienta, Genaro, Ortiz, Ernesto, Possani, Lourival D., Licea-Navarro, Alexei F.“…Transdecoder was used to extract likely coding sequences from Trinity transcripts, and PDI-specific sequence motif “APWCGHCK” was used to capture potential PDIs. …”
Publicado 2016
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318“…Overall, 223,610,443 bases were generated. Trinity reads were assembled to trinity transcripts. …”
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319por Guerrero-Sanchez, Victor M., Maldonado-Alconada, Ana M., Amil-Ruiz, Francisco, Verardi, Andrea, Jorrín-Novo, Jesús V., Rey, María-Dolores“…The MIRA-Illumina and TRINITY-Ion Torrent assemblies annotated the highest number of total transcripts (62,628 and 74,058 respectively). …”
Publicado 2019
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320por Sear, Tom“…‘Xeno’ because this war incorporates the alien and the Other into a new, dynamic, topological trinity. Xenowar is the Clausewitzian trinity spun in recursive loops of alterity, where conflict diagonalizes into an inhuman, alien cognition. …”
Publicado 2020
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