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321“…These were assembled using CStone, Trinity and rnaSPAdes; the latter two being high-quality, well established, de novo assembers. …”
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322por Gomez, Christian, Espinoza, Ingrid C., Harrison, Kerri A., Backus, Fremel J., Ayyalasomayajula, Krishna K., Adcock, Kim G., Stempak, Lisa M., Summers, Richard L., Ross, Leigh Ann, Walker, Larry“…G6PD activity was evaluated using point of care methods [Trinity Biotech test or CareSTART Biosensor], and Gold Standard quantitative spectrophotometric assay (LabCorp). …”
Publicado 2020
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323por Huang, Yongjie, Zhai, Yongnan, Huang, Ya, Huang, Yufeng, Liu, Kun, Zhang, Jie, Zhou, Jihai“…In both the L1 and L2 groups, DEGs were significantly enriched in “Ribosome biosynthesis”; meanwhile, in the L3 group, the DEGs were significantly enriched in “Amino and ribonucleotide sugar metabolism” in KEGG metabolic pathway analysis. Additionally, 4CL (TRINITY_DN40230_c0_g2) and COMT (TRINITY_DN21272_c0_g1) of the phenylpropanoid metabolic pathway were significantly downregulated in the L3 group. …”
Publicado 2022
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324por von der Schmitt, Hans“…Also the methodology used forms a trinity: experiment, theory, and simulation. This talk has a focus on computing and simulation. …”
Publicado 2012
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325por O’Boyle, Niamh M., Helesbeux, Jean-Jacques, Meegan, Mary J., Sasse, Astrid, O’Shaughnessy, Elizabeth, Qaisar, Alina, Clancy, Aoife, McCarthy, Florence, Marchand, Pascal“…The Group for the Promotion of Pharmaceutical Chemistry in Academia (GP(2)A) held their 30th annual conference in August 2022 in Trinity College Dublin, Ireland. There were 9 keynote presentations, 10 early career researcher presentations and 41 poster presentations.…”
Publicado 2023
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326por Latorre, Jose I.“…His clear, fluent and articulate narration brings first hand information on the life at Los Alamos, the main scientific characters there, the Trinity test of the first ever nuclear explosion, the bombing of Japan and the political aftermath of the project. …”
Publicado 2014
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327por Davis, Michael“…--HTML-->According to a recent research paper from Trinity College Dublin, Android devices send substantial amounts of information to the OS developer and to third-parties (Google, Microsoft, Facebook, etc.) that have pre-installed system apps, even if these apps are never used. …”
Publicado 2021
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328por Breathnach, Caoimhghin S“…At the age of twenty he entered Trinity College Dublin to study engineering, but he was a professional student who passed through all the faculties and took legal and medical degrees in 1864-1870. …”
Publicado 2015
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329por Giorello, Facundo M, Feijoo, Matias, D’Elía, Guillermo, Valdez, Lourdes, Opazo, Juan C, Varas, Valeria, Naya, Daniel E, Lessa, Enrique P“…CONCLUSION: Based on our assembly results, Trinity's in silico normalization is the best algorithm in terms of cost-benefit returns; however, our results also indicate that normalization should be avoided if complete or nearly complete coding sequences of genes are desired. …”
Publicado 2014
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330por Espino, Fe Esperanza, Bibit, Jo-Anne, Sornillo, Johanna Beulah, Tan, Alvin, von Seidlein, Lorenz, Ley, Benedikt“…Results were compared to spectrophotometry (Procedure 345, Trinity Biotech, Ireland). Sensitivity and specificity were calculated for each test with cut-off activities of 10%, 20%, 30% and 60% of the adjusted male median. …”
Publicado 2016
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331por Rana, Satshil B., Zadlock, Frank J., Zhang, Ziping, Murphy, Wyatt R., Bentivegna, Carolyn S.“…RESULT: Six different assembly strategies were evaluated from four different assemblers. The Trinity assembly was used in its default 25 single k-mer value while Bridger, Oases, and SOAPdenovo-Trans were performed with multiple k-mer strategies. …”
Publicado 2016
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332“…RESULTS: This paper reports on the de novo transcriptome assembly of E. fetida using Trinity, a freely available software tool. Trinotate was used to carry out functional annotation of the Trinity generated transcriptome file and the transdecoder generated peptide sequence file along with BLASTX, BLASTP and HMMER searches and were loaded into a Sqlite3 database. …”
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333por Chana-Munoz, Andres, Jendroszek, Agnieszka, Sønnichsen, Malene, Kristiansen, Rune, Jensen, Jan K., Andreasen, Peter A., Bendixen, Christian, Panitz, Frank“…Reads were assembled with the Trinity de novo assembler both within each tissue and across all tissues combined resulting in 362,690 transcripts in the combined assembly which represent 289,515 Trinity genes. …”
Publicado 2017
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334Publicado 2021“…Rebecca is a Research and Teaching Fellow in the lab of Prof. Paula Murphy at Trinity College Dublin, Ireland, investigating the role environmental cues play in the correct development of cells and tissues during embryonic development.…”
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335“…In this study, with the assistance from the Trinity, Bowtie2 and SAMtools softwares, 218 465 single nucleotide polymorphisms (SNPs) were identified by mapping the Illumina sequences to the reference transcriptome. …”
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336por Ahmadi, Hosein, Sheikh-Assadi, Morteza, Fatahi, Reza, Zamani, Zabihollah, Shokrpour, Majid“…Based on the normalized scores of 16 benchmarking metrics, EvidentialGene, BinPacker, Trinity, rnaSPAdes, CAP3, IDBA-trans, and Velvet-Oases performed better, respectively. …”
Publicado 2023
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337“…The resulting reads were assembled using either the Trinity assembler on all quality controlled reads or both the Velvet and Oases assemblers on reads passing a stringent digital normalization filter. …”
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338por Singh, Dave, Fabbri, Leonardo M, Vezzoli, Stefano, Petruzzelli, Stefano, Papi, Alberto“…METHODS: The studies compared BDP/FF/G to BDP/FF (TRILOGY), tiotropium (TRINITY), and indacaterol/glycopyrronium (IND/GLY; TRIBUTE). …”
Publicado 2019
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340por Seregin, Gregory“…The lecture notes in this book are based on the TCC (Taught Course Centre for graduates) course given by the author in Trinity Terms of 2009 2011 at the Mathematical Institute of Oxford University. …”
Publicado 2014
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