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641por Gilmore, Brynne, Adams, Ben Jack, Bartoloni, Alex, Alhaydar, Bana, McAuliffe, Eilish, Raven, Joanna, Taegtmeyer, Miriam, Vallières, Frédérique“…ETHICS AND DISSEMINATION: Trinity College Dublin's Health Policy and Management/Centre for Global Health Research Ethics Committee gave ethical approval for the protocol development phase. …”
Publicado 2016
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642“…The second workflow deploys Trinity for de novo assembly and uses RSEM for transcript quantification and EdgeR for differential analysis. …”
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643por Wu, Xiaobin, Chao, Yan, Wan, Zemin, Wang, Yunxiu, Ma, Yan, Ke, Peifeng, Wu, Xinzhong, Xu, Jianhua, Zhuang, Junhua, Huang, Xianzhang“…MATERIALS AND METHODS: A comparative evaluation of the analytical performances (precision, linearity, accuracy, method comparison, and interferences including bilirubin, triglyceride, cholesterol, labile HbA(1c) (LA(1c)), vitamin C, aspirin, fetal haemoglobin (HbF), and haemoglobin E (Hb E)) were performed on Capillarys 2 Flex Piercing (Capillarys 2FP) (Sebia, France), Tosoh HLC-723 G8 (Tosoh G8) (Tosoh, Japan), Premier Hb9210 (Trinity Biotech, Ireland) and Roche Cobas c501 (Roche c501) (Roche Diagnostics, Germany). …”
Publicado 2016
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644por Wei, Shugen, Ma, Xiaojun, Pan, Limei, Miao, Jianhua, Fu, Jine, Bai, Longhua, Zhang, Zhonglian, Guan, Yanhong, Mo, Changming, Huang, Hao, Chen, Maoshan“…A total of 164,546 transcripts corresponding to 114,971 genes were assembled by Trinity and annotated by mapping them to NCBI non-redundant (NR), UniProt, GO, KEGG pathway and COG databases. …”
Publicado 2017
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645por Singh, Reema, Lawal, Hajara M., Schilde, Christina, Glöckner, Gernot, Barton, Geoffrey J., Schaap, Pauline, Cole, Christian“…RESULTS: An initial de novo transcriptome assembly was generated by Trinity for each species and then refined with Program to Assemble Spliced Alignments (PASA). …”
Publicado 2017
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646por Li, Xiao-Hong, DeMarco, Ricardo, Neves, Leandro X., James, Sally R., Newling, Katherine, Ashton, Peter D., Cao, Jian-Ping, Wilson, R. Alan, Castro-Borges, William“…The sequence reads were then assembled de novo using Trinity and those genes enriched more than eightfold in the head preparation were subjected to detailed bioinformatics analysis. …”
Publicado 2018
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647por Bancone, Germana, Gornsawun, Gornpan, Chu, Cindy S., Porn, Pen, Pal, Sampa, Bansil, Pooja, Domingo, Gonzalo J., Nosten, Francois“…Samples were analyzed by complete blood count, by gold standard spectrophotometric assay using Trinity kits and by the latest model of Carestart G6PD biosensor which analyzes both G6PD and hemoglobin. …”
Publicado 2018
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648por Chou, Chih-Hung, Huang, Hsi-Yuan, Huang, Wei-Chih, Hsu, Sheng-Da, Hsiao, Chung-Der, Liu, Chia-Yu, Chen, Yu-Hung, Liu, Yu-Chen, Huang, Wei-Yun, Lee, Meng-Lin, Chen, Yi-Chang, Huang, Hsien-Da“…RESULTS: To improve the assembly quality, three computational tools (Trinity, Oases and SOAPdenovo-Trans) were employed to enhance individual transcriptome assembly, and CAP3 and CD-HIT-EST software were then used to merge these three assembled transcriptomes. …”
Publicado 2018
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649por Rodríguez, Felipe E., Laporte, Daniel, González, Alberto, Mendez, Katterinne N., Castro-Nallar, Eduardo, Meneses, Claudio, Huidobro-Toro, Juan Pablo, Moenne, Alejandra“…RESULTS: De novo transcriptomes were assembled using the Trinity software, putative proteins were annotated and classified using Blast2GO. …”
Publicado 2018
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650por Shibao, Priscila Yumi Tanaka, Cologna, Camila Takeno, Morandi-Filho, Romualdo, Wiezel, Gisele Adriano, Fujimura, Patricia Tiemi, Ueira-Vieira, Carlos, Arantes, Eliane Candiani“…The raw reads were trimmed and de novo assembled using Trinity. The resulting sequences were submitted to functional annotation against non-redundant NCBI database and Database of Anuran Defense Peptide. …”
Publicado 2018
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651por Power, Jessica, Gilmore, Brynne, Vallières, Frédérique, Toomey, Elaine, Mannan, Hasheem, McAuliffe, Eilish“…Ethical approval has been received through Health Policy and Management/Centre for Global Health Research Ethics Committee of Trinity College Dublin.…”
Publicado 2019
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652por Li, Charles, Yan, Xianghe, Lillehoj, Hyun S., Oh, Sungtaek, Liu, Liheng, Sun, Zhifeng, Gu, Changqin, Lee, Youngsub, Xianyu, Zhezi, Zhao, Hongyan“…RESULTS: Total RNA from cecal samples of the uninfected naïve control and the EM groups was used to make libraries, generating 354,924,372 and 356,229,250 usable reads, respectively, which were assembled into a total of 386,088 high-quality unigenes (transcripts) in Trinity software. RNA-Seq analysis of cecal samples in the two groups revealed 332 upregulated and 363 downregulated genes with significant differences (P ≤ 0.05), including several significant immune-related gene families, such as the major histocompatibility complex (MHC) class I alpha chain, granzyme A and immunoglobulin subtype genes among upregulated differentially expressed genes. …”
Publicado 2019
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653por Van Dolah, Frances M., Morey, Jeanine S., Milne, Shard, Ung, André, Anderson, Paul E., Chinain, Mireille“…The current transcriptome analysis compares polyketide synthase (PKS) gene transcripts expressed in two species of Gambierdiscus from French Polynesia: a highly toxic ciguatoxin producer, G. polynesiensis, versus a non-ciguatoxic species G. pacificus, each assembled from approximately 180 million Illumina 125 nt reads using Trinity, and compares their PKS content with previously published data from other Gambierdiscus species and more distantly related dinoflagellates. …”
Publicado 2020
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654por Getachew, Awraris, Abejew, Tessema Aynalem, Wu, Jiangli, Xu, Jin, Yu, Huimin, Tan, Jing, Wu, Pengjie, Tu, Yangyang, Kang, Weipeng, Wang, Zheng, Xu, Shufa“…Illumina sequencing generated a total of 394,910,604 clean reads and de novo Trinity-based assembled into 12,989 unigenes, among these, 9,598 genes were successfully annotated to known proteins in UniProt database. …”
Publicado 2020
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655por Castro, Juan C., Maddox, J. Dylan, Rodríguez, Hicler N., Castro, Carlos G., Imán-Correa, Sixto A., Cobos, Marianela, Paredes, Jae D., Marapara, Jorge L., Braga, Janeth, Adrianzén, Pedro M.“…The transcriptome was de novo assembled using Trinity v2.9.1 and SuperTranscripts v2.9.1. A total of 21,161 transcripts were assembled ranging in size from 500 to 10,001 bp with a N50 value of 1,485 bp. …”
Publicado 2020
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656“…De novo transcriptome assemblies were then performed using Trinity and Oases. Assemblies of transcriptomes were not relevant when more than a single genetic type was considered. …”
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657por Pereira, Leandro de Mattos, Messias, Elisa Alves, Sorroche, Bruna Pereira, Oliveira, Angela das Neves, Arantes, Lidia Maria Rebolho Batista, de Carvalho, Ana Carolina, Tanaka-Azevedo, Anita Mitico, Grego, Kathleen Fernandes, Carvalho, André Lopes, Melendez, Matias Eliseo“…De novo assembly of B. jararaca transcriptome was done using Trinity. Annotation was performed using Blast2GO. …”
Publicado 2020
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658por Francisco, Mark D., Chen, Wen-Fan, Pan, Cheng-Tang, Lin, Ming-Cheng, Wen, Zhi-Hong, Liao, Chien-Feng, Shiue, Yow-Ling“…The human testing was performed in accordance with the ethical standards of the Trinity University of Asia—Institutional Ethics Review Committee (TUA—IERC). …”
Publicado 2021
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659“…CONCLUSION: An unholy trinity of diabetes, rampant use of corticosteroid in a background of COVID-19 appears to increase mucormycosis. …”
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660por Siregar, Ulfah J., Nugroho, Aditya, Shabrina, Hasyyati, Indriani, Fitri, Damayanti, Apriliya, Matra, Deden D.“…De novo transcriptome were assembled using Trinity and produced 96,164 contigs after filtering and clustering. …”
Publicado 2021
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