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661“…CONCLUSIONS: For RNA-seq, comparisons with Trinity, rnaSPAdes, SPAligner, and SPAdes assembly of reads aligned to target proteins by DIAMOND show that SAUTE_PROT finds more coding sequences that translate to benchmark proteins. …”
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662por Fan, Yanru, Li, Wanfeng, Li, Zhexin, Dang, Shaofei, Han, Suying, Zhang, Lifeng, Qi, Liwang“…In total, 203,256 unigenes were generated using Trinity de novo assembly, and 2467 differentially expressed genes were obtained by comparing transgenic and WT lines. …”
Publicado 2021
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663por Braido, Fulvio, Corsico, Angelo G., Paleari, Davide, Piraino, Alessio, Cavalieri, Luca, Scichilone, Nicola“…A significant reduction in moderate/severe exacerbations has been observed with a fixed triple combination of beclometasone dipropionate (BDP), formoterol fumarate (FF) and glycopyrronium (G) in a single inhaler. The TRILOGY, TRINITY and TRIBUTE studies have provided confirming evidence for a clinical benefit of triple therapy over ICS/LABA combination treatment, LAMA monotherapy and LABA/LAMA combination, with prevention of exacerbations being a key finding. …”
Publicado 2022
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664por Boštjančić, Ljudevit Luka, Francesconi, Caterina, Rutz, Christelle, Hoffbeck, Lucien, Poidevin, Laetitia, Kress, Arnaud, Jussila, Japo, Makkonen, Jenny, Feldmeyer, Barbara, Bálint, Miklós, Schwenk, Klaus, Lecompte, Odile, Theissinger, Kathrin“…Raw data was checked for quality with FastQC, adapter and quality trimming were conducted using Trimmomatic followed by de novo assembly with Trinity. Assembly quality was assessed with BUSCO, at 93.30% and 93.98% completeness for the noble crayfish and the marbled crayfish, respectively. …”
Publicado 2022
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665“…The target genes of ptc-miR156k_L + 1, mtr-miR156b-5p, gma-miR156a_R + 1, and mtr-miR156e all belonged to TRINITY_DN14567_c0_g4, which is a gene in the plant hormone signal transduction pathway. …”
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666por Sen, Sidharth, King, Shannon K., McCubbin, Tyler, Greeley, Laura A., Mertz, Rachel A., Becker, Cheyenne, Niehues, Nicole, Zeng, Shuai, Stemmle, Jonathan T., Peck, Scott C., Oliver, Melvin J., Fritschi, Felix B., Braun, David M., Sharp, Robert E., Joshi, Trupti“…The Necklace pipeline was used to combine a Trinity de novo assembly along with a reference guided assembly and the Viridiplantae proteome to generate an annotated consensus “SuperTranscriptome” assembly of 47,915 transcripts with a N50 of 3152 bp in length. …”
Publicado 2023
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667Publicado 2009Tabla de Contenidos: “…Eco tech: advanced technology becomes ecological : Hall 26, Hanover, Germany ; Iguzzini Illuminzione Headquarter, Recanati, Italy ; Law courts, Bordeaux, France ; Öko-Hauptschule, Mäder, Austria ; Torre Agbar, Barcelona, Spain ; Thermal spa, Bad Aibling, Germany ; Eden Project, Cornwall, UK ; Bedzed, London, UK ; Little Tesseract, Rhinebeck, USA ; Barajas Airport, Madrid, Spain ; Renovation and expansion of the Morgan Library, New York, USA ; Mercedes-Benz Museum, Stuttgart, Germany ; Academy School Discovery Canyon, Colorado, USA ; Pabellón de España, Zaragoza, Spain ; Bahrain World Trade Center, Manama, Bahrain -- Low tech: local natural materials for sustainable architecture : Arcosanti, Arizona, USA ; Jean-Marie Tjibaou Cultural Center, Noumea, New Caledonia ; Arthur & Yvonne Boyd Education Center, Riversdale, Australia ; Woodleigh School Science Building, Baxter, Australia ; Pabellón zeri, Manizales, Colombia ; Japanese Pavilion, Hanover, Germany ; Great Bamboo Wall, Beijing, People's Republic of China ; Quinta Monroy, Iquique, Chile -- Green arch: nature in man-made structures : Menara mesiniaga, Selangor, Malaysia ; Prefectural International Hall, Fukuoka, Japan ; Commerzbank, Frankfurt, Germany ; Institute for Forestry and Nature Research, Wageningen, The Netherlands ; Hedge Building, Rostock, Germany ; Residence Antilia, Mumbai, India ; Genzyme Center Headquarters building, Cambridge, USA ; Federal Agency of the Environment, Dessau, Germany ; Whitney water purification facility and park, Hamden, USA ; Tour signal, Paris, France ; Energy plus building, Paris, France ; Elephant & castle eco tower, London, UK ; One Gallions, London, UK -- Land arch: architecture takes on the shapes of nature : Fitness Center, Barcelona, Spain ; Museum of Human Evolution, Burgos, Spain ; Dragspelhuset, Övre Gla Lake, Sweden ; Vulcania, Saint-Ours les Roches, France ; Grin Grin Park, Fukuoka, Japan ; The Nelson-Atkins Museum of Art, Kansas City, USA ; Renovation and expansion of the California Academy of Sciences, San Francisco, USA ; CIty of Culture of Galicia, Santiago de Compostela, Spain -- Recycle arch: the sustainable transformation of existing structures : Hellersdorf, Berlin, Germany ; Reichstag, Berlin, Germany ; Trinity Buoy Wharf Container City, London, UK ; Tea House on Bunker, Vreeland, The Netherlands; Greenwich Millennium Village, London, UK ; Caixaforum Madrid, Madrid, Spain.…”
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668Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halyspor Ioannidis, Panagiotis, Lu, Yong, Kumar, Nikhil, Creasy, Todd, Daugherty, Sean, Chibucos, Marcus C, Orvis, Joshua, Shetty, Amol, Ott, Sandra, Flowers, Melissa, Sengamalay, Naomi, Tallon, Luke J, Pick, Leslie, Hotopp, Julie C Dunning“…Using normalized, strand-specific libraries, we sequenced pools of all BMSB life stages on the Illumina HiSeq. Trinity was used to assemble 200,000 putative transcripts in >100,000 components. …”
Publicado 2014
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669por Garcia-Seco, Daniel, Zhang, Yang, Gutierrez-Mañero, Francisco J, Martin, Cathie, Ramos-Solano, Beatriz“…We demonstrated that de novo assembly, using Trinity and later annotation with Blast using different databases, were complementary to alignment to the reference sequence using SOAPaligner/SOAP2. …”
Publicado 2015
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670por Rao, Rama, Bing Zhu, Ya, Alinejad, Tahereh, Tiruvayipati, Suma, Lin Thong, Kwai, Wang, Jun, Bhassu, Subha“…Via de novo assembly by Trinity assembler, 59,050 control unigenes and 73,946 Vibrio-infected group unigenes were obtained. …”
Publicado 2015
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671por Visser, Erik A., Wegrzyn, Jill L., Steenkmap, Emma T., Myburg, Alexander A., Naidoo, Sanushka“…For this purpose three transcriptome assemblers, Trinity, Velvet/OASES and SOAPdenovo-Trans, were used to maximise diversity and completeness of assembled transcripts. …”
Publicado 2015
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672por Patnaik, Bharat Bhusan, Wang, Tae Hun, Kang, Se Won, Hwang, Hee-Ju, Park, So Young, Park, Eun Bi, Chung, Jong Min, Song, Dae Kwon, Kim, Changmu, Kim, Soonok, Lee, Jun Sang, Han, Yeon Soo, Park, Hong Seog, Lee, Yong Seok“…In this study, we conducted a de novo transcriptome sequencing and annotation analysis of C. plicata using Illumina HiSeq 2500 next-generation sequencing (NGS) technology, the Trinity assembler, and bioinformatics databases to prepare a sustainable resource for the identification of candidate genes involved in immunity, defense, and reproduction. …”
Publicado 2016
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673“…METHODS: Illumina sequencing and de novo assembly using the Trinity program was used to generate a high-quality transcriptomic dataset spanning the entirety of in ovo development in schistosomiasis-free B. glabrata. …”
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674“…All of these datasets were assembled using three currently popular assembly packages (CLC, Trinity and IDBA-tran). In addition, we experimentally demonstrate that transcripts unique to one particular assembly package are likely to be bioinformatic artefacts. …”
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675por Ke, Peifeng, Liu, Jiawei, Chao, Yan, Wu, Xiaobin, Xiong, Yujuan, Lin, Li, Wan, Zemin, Wu, Xinzhong, Xu, Jianhua, Zhuang, Junhua, Huang, Xianzhang“…For method comparison, HbA(1c) was quantified by Premier Hb9210 (Trinity Biotech, Ireland) in 98 thalassaemia patients samples. …”
Publicado 2017
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676“…RESULTS: A total of 79,414 transcripts were assembled using Trinity, of which 57.67% were functionally annotated. …”
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677por Wang, Zhengfei, Sun, Linxia, Guan, Weibing, Zhou, Chunlin, Tang, Boping, Cheng, Yongxu, Huang, Jintian, Xuan, Fujun“…A total of 126,188 (female) and 164,616 (male) transcripts were then generated by de novo transcriptome assembly using Trinity. Functional annotation of the obtained unigenes revealed that a large number of key genes and some important pathways may participate in cell proliferation and signal transduction. …”
Publicado 2018
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678por Chen, Long-Fei, Han, Xiao-Long, Li, Fen-Xiang, Yao, Yun-Ying, Fang, Jin-Ping, Liu, Xiao-Ju, Li, Xiao-Cong, Wu, Kun, Liu, Min, Chen, Xiao-Guang“…Comprehensive functional annotation and gene ontology analysis revealed that stress response-related genes are important for survival of bradyzoites in immune-competent hosts. We compared Trinity-based de novo and genome-based strategies, and found that the de novo assembly strategy compensated for the defects of the genome-based strategy by filtering out several transcripts with low expression or those unannotated on the genome. …”
Publicado 2018
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679por Santana, Rosa Amélia Gonçalves, Oliveira, Maurício Costa, Cabral, Iria, Junior, Rubens Celso Andrade Silva, de Sousa, Débora Raysa Teixeira, Ferreira, Lucas, Lacerda, Marcus Vinícius Guimarães, Monteiro, Wuelton Marcelo, Abrantes, Patrícia, Guerra, Maria das Graças Vale Barbosa, Silveira, Henrique“…Readings were checked for quality control and analysed using the Trinity platform for de novo transcriptome assembly. …”
Publicado 2019
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680por Zhu, Zhaolu, Rehman, Kashif ur, Yu, Yongqiang, Liu, Xiu, Wang, Hui, Tomberlin, Jeffery K., Sze, Sing-Hoi, Cai, Minmin, Zhang, Jibin, Yu, Ziniu, Zheng, Jinshui, Zheng, Longyu“…By Illumina sequencing, 218,295,450,000 nt were generated. Through assembly by Trinity, 70,475 unigenes were obtained with an average length of 1064 nt and an N50 of 1749 nt. …”
Publicado 2019
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