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  1. 181
    “…Conclusion: This study provides algorithmic foundation for building gene ontologies by capturing hierarchical and pleiotropic structure embedded in biomolecular data. Contact: tideker@ucsd.edu…”
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    Inferring gene ontologies from pairwise similarity data
  2. 182
    “…Key elements of INCF-DAI cyberinfrastructure have been prototyped for both mouse and rat brain atlas sources, including the Allen Mouse Brain Atlas, UCSD Cell-Centered Database, and Edinburgh Mouse Atlas Project.…”
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    Cyberinfrastructure for the digital brain: spatial standards for integrating rodent brain atlases
  3. 183
    “…METHODS: This analysis included all adult acute ischemic stroke patients from a prospective registry of consecutive patients (UCSD SPOTRIAS database, 2003-2014) with 90-day mRS score available who were defined as “mild” using either: NIHSS 0-5 or a TREAT Task Force definition (NIHSS 0-5 and non-disabling based on pre-specified syndromes). …”
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    Defining Mild Stroke: Outcomes Analysis of Treated and Untreated Mild Stroke Patients
  4. 184
    “…Inter- and intra- annotator variability among six human experts was quantified and compared to semi- and fully- automated annotation methods, which are made available at coralnet.ucsd.edu. Our results indicate high expert agreement for identification of coral genera, but lower agreement for algal functional groups, in particular between turf algae and crustose coralline algae. …”
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    Towards Automated Annotation of Benthic Survey Images: Variability of Human Experts and Operational Modes of Automation
  5. 185
    “…The Short-form of Korean-Wechsler Adult Intelligence Scale, the Korean version of the University of California San Diego (UCSD) Performance-based Skills Assessment (K-UPSA), and the Wisconsin Card Sorting Test (WCST) were used to assess cognitive functions. …”
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    The Relationship between Language Ability and Cognitive Function in Patients with Schizophrenia
  6. 186
    “…A plug-in for EEGLAB (sccn.ucsd.edu/eeglab), CTAGGER, is also available to speed the process of tagging existing studies.…”
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    Hierarchical Event Descriptors (HED): Semi-Structured Tagging for Real-World Events in Large-Scale EEG
  7. 187
    “…Social function, neurocognition, and daily activity skills were evaluated by the Social Functioning Scale (SFS), Brief Assessment of Cognition in Schizophrenia (BACS) and UCSD Performance-based Skills Assessment-Brief (UPSA-B), respectively. …”
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    Cognitive insight and functional outcome in schizophrenia; a multi-center collaborative study with the specific level of functioning scale–Japanese version
  8. 188
    “…Significant effects were also shown on daily living skills (functional capacity), measured by the UCSD performance-based skills assessment-brief (d = 0.70). …”
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    Possible Facilitative Effects of Repeated Anodal Transcranial Direct Current Stimulation on Functional Outcome 1 Month Later in Schizophrenia: An Open Trial
  9. 189
    “…Functional capacity will be evaluated by the UCSD Performance-based Skills Assessment-Brief as primary outcome. …”
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    Effect of Transcranial Direct Current Stimulation on Functional Capacity in Schizophrenia: A Study Protocol for a Randomized Controlled Trial
  10. 190
    “…Cognition, capacity for everyday activities, and social functioning were assessed by the Japanese versions of the MATRICS Cognitive Consensus Battery (MCCB), the UCSD Performance-based Skills Assessment-Brief (UPSA-B), and the Social Functioning Scale Individuals’ version modified for the MATRICS-PASS (Modified SFS for PASS), respectively. …”
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    Factors predicting work outcome in Japanese patients with schizophrenia: role of multiple functioning levels
  11. 191
    “…StanDep, as a MATLAB toolbox, is available at https://github.com/LewisLabUCSD/StanDep…”
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    StanDep: Capturing transcriptomic variability improves context-specific metabolic models
  12. 192
    “…We conducted two small focus groups and two one-on-one interviews using focus group guides with the NOK of Last Gift study participants at the University of California, San Diego (UCSD). Participating NOK included six individuals (n = 5 male and n = 1 female), including a grandmother, grandfather, partner, spouse, and two close friends. …”
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    Attitudes and perceptions of next-of-kin/loved ones toward end-of-life HIV cure-related research: A qualitative focus group study in Southern California
  13. 193
    “…RESULT: The proposed model achieved 0.94 precision (Pn), 0.94 accuracy (Ac), 0.94 recall (Rl), and 0.94 F1-score (Fe) on POF Hospital dataset while 0.96 Pn, 0.96 Ac, 0.95 Rl, and 0.96 Fe on UCSD-AI4H dataset. CONCLUSION: The proposed method achieved better results when compared to the latest published work in this domain.…”
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    Quantum Machine Learning Architecture for COVID-19 Classification Based on Synthetic Data Generation Using Conditional Adversarial Neural Network
  14. 194
    “…The face detector was able to achieve an accuracy of over 89.6% using the Honda/UCSD dataset which runs at 26 FPS with darknet-53 to VGA-resolution images for classification tasks. …”
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    Efficient Face Recognition System for Operating in Unconstrained Environments
  15. 195
    “…Inhalant use was assessed through the UCSD Inhalant Questionnaire and sleep quality was gauged through the Pittsburgh Sleep Quality Index (PSQI). …”
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    Deleterious Association of Inhalant Use on Sleep Quality during the COVID-19 Pandemic
  16. 196
    “…This study assessed the temporal association between serum vitamin D and COVID-19 with two single-institution case–control studies through the University of California San Diego (UCSD) Health System. (2) Methods: This study included patients who tested positive for COVID-19 from 1 January to 30 September 2020 with serum 25-hydroxy-vitamin D (25(OH)D) measured within 180 days of diagnosis. …”
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    Temporal Association of Reduced Serum Vitamin D with COVID-19 Infection: Two Single-Institution Case–Control Studies
  17. 197
    “…All participants underwent cognitive assessment using the SCoRS, which was verified by the Brief Assessment of Cognition in Schizophrenia (BACS), and the UCSD Performance-based Skills Assessment, Brief Version (UPSA-B). …”
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    Validation of the Chinese Version of the Schizophrenia Cognition Rating Scale
  18. 198
    “…Data are available on the MassIVE (https://massive.ucsd.edu, data set identifier MSV000090213).…”
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    Traveling Wave Ion Mobility-Derived Collision Cross Section Database for Plant Specialized Metabolites: An Application to Ventilago harmandiana Pierre
  19. 199
    “…To help support the growing interest in sequence-based analyses of natural product biosynthetic diversity, here we introduce version 2 of the webtool, NaPDoS2, available at http://napdos.ucsd.edu/napdos2. This update includes the addition of 1417 KS sequences, representing a major expansion of the taxonomic and functional diversity represented in the webtool database. …”
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    The Natural Product Domain Seeker version 2 (NaPDoS2) webtool relates ketosynthase phylogeny to biosynthetic function
  20. 200
    “…AVAILABILITY AND IMPLEMENTATION: The data underlying this article, nucleotide-level importance scores, and code for running the deep learning pipeline are available at https://github.com/Pandaman-Ryan/AgentBind-brain. CONTACT: mgymrek@ucsd.edu SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics Advances online.…”
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    Deep learning predicts the impact of regulatory variants on cell-type-specific enhancers in the brain
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