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481“…AVAILABILITY AND IMPLEMENTATION: LDmat is implemented in python, and can be installed on Unix systems with the command ‘pip install ldmat’. …”
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482por Jadach, Stanislaw, Placzek, Wiesiek, Skrzypek, Maciej, Ward, B F L, Was, Zbigniew“…The communication between KoralW and YFSWW3 is done with the help of the FIFO facility of the UNIX/Linux operating system. This does not require any modifications of the FORTRAN source codes. …”
Publicado 2001
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483“…It is implemented in PERL and runs on LINUX/UNIX platforms. AutoFACT is available at .…”
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484“…RESULTS: PSI-BLAST-ISS is a standalone Unix-based tool designed to delineate reliable regions of sequence alignments as well as to suggest potential variants in unreliable regions. …”
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485“…The program written in C++ can be freely downloaded from ftp://ftp.epd.unil.ch/pub/software/unix/madap. The MADAP web server can be accessed at http://www.isrec.isb-sib.ch/madap/.…”
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486por Huson, Daniel H, Richter, Daniel C, Rausch, Christian, Dezulian, Tobias, Franz, Markus, Rupp, Regula“…The software is written in Java 1.4 and installers are provided for Linux/Unix, MacOS X and Windows XP. CONCLUSION: Dendroscope is a user-friendly program for visualizing and navigating phylogenetic trees, for both small and large datasets.…”
Publicado 2007
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487“…The Magallanes' API is freely available for academic use, and together with Magallanes application has been tested in MS-Windows™ XP and Unix-like operating systems. Detailed implementation information, including user manuals and tutorials, is available at . …”
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488“…BEDTools can be combined with one another as well as with standard UNIX commands, thus facilitating routine genomics tasks as well as pipelines that can quickly answer intricate questions of large genomic datasets. …”
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489por Uebe, Steffen, Pasutto, Francesca, Krumbiegel, Mandy, Schanze, Denny, Ekici, Arif B, Reis, André“…BACKGROUND: Most software packages for whole genome association studies are non-graphical, purely text based programs originally designed to run with UNIX-like operating systems. Graphical output is often not intended or supposed to be performed with other command line tools, e.g. gnuplot. …”
Publicado 2010
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490por Glez-Peña, Daniel, Gómez-López, Gonzalo, Reboiro-Jato, Miguel, Fdez-Riverola, Florentino, Pisano, David G“…PileLine tools are coded in Java and run on both UNIX (Linux, Mac OS) and Windows platforms. The set of tools comprising PileLine are designed to be memory efficient by performing fast seek on-disk operations over sorted GP files. …”
Publicado 2011
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491“…It is equipped with many functions for merging fragments of different nucleic acid structures into a single model and analyzing their geometry. Windows and UNIX implementations of ModeRNA with comprehensive documentation and a tutorial are freely available.…”
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492“…Previously, HMMER has mainly been available only as a computationally intensive UNIX command-line tool, restricting its use. Recent advances in the software, HMMER3, have resulted in a 100-fold speed gain relative to previous versions. …”
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493por Shah, T. S., Liu, J. Z., Floyd, J. A. B., Morris, J. A., Wirth, N., Barrett, J. C., Anderson, C. A.“…Availability and implementation: optiCall is implemented in C++ for use on UNIX operating systems and is available for download at http://www.sanger.ac.uk/resources/software/opticall/. …”
Publicado 2012
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494“…GEMBASSY tools can be used seamlessly with other EMBOSS tools and UNIX command line tools. The source code written in C is available from GitHub (https://github.com/celery-kotone/GEMBASSY/) and the distribution package is freely available from the GEMBASSY web site (http://www.g-language.org/gembassy/).…”
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495por Jones, Philip, Binns, David, Chang, Hsin-Yu, Fraser, Matthew, Li, Weizhong, McAnulla, Craig, McWilliam, Hamish, Maslen, John, Mitchell, Alex, Nuka, Gift, Pesseat, Sebastien, Quinn, Antony F., Sangrador-Vegas, Amaia, Scheremetjew, Maxim, Yong, Siew-Yit, Lopez, Rodrigo, Hunter, Sarah“…Availability and implementation: InterProScan is distributed via FTP at ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/ and the source code is available from http://code.google.com/p/interproscan/. …”
Publicado 2014
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496por Hoede, Claire, Arnoux, Sandie, Moisset, Mark, Chaumier, Timothée, Inizan, Olivier, Jamilloux, Véronique, Quesneville, Hadi“…AVAILABILITY: PASTEC is available as a REPET module or standalone software (http://urgi.versailles.inra.fr/download/repet/REPET_linux-x64-2.2.tar.gz). It requires a Unix-like system. There are two standalone versions: one of which is parallelized (requiring Sun grid Engine or Torque), and the other of which is not.…”
Publicado 2014
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497“…It is also particularly suitable to analyze multiple data sets produced in simulation studies. Unix, Windows, and MacOs versions are provided, as well as the source code for easier pipeline implementations.…”
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498por Pantoja, Yan, Pinheiro, Kenny, Veras, Allan, Araújo, Fabrício, Lopes de Sousa, Ailton, Guimarães, Luis Carlos, Silva, Artur, Ramos, Rommel T. J.“…Among these software tools, PGAP was developed in the Perl scripting language and its reliance on UNIX platform terminals and its requirement for an extensive parameterized command line can become a problem for users without previous computational knowledge. …”
Publicado 2017
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499por Schott, David A, Vinnakota, Abhinav G, Portwood, John L, Andorf, Carson M, Sen, Taner Z“…SNPversity was created to answer this need by building an open-source visualization tool that can be implemented on a Unix-like machine and served through a web browser that can be accessible worldwide. …”
Publicado 2018
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500por Płuciennik, Alicja, Stolarczyk, Michał, Bzówka, Maria, Raczyńska, Agata, Magdziarz, Tomasz, Góra, Artur“…Availability: CRAN project page: https://cran.r-project.org/package=BALCONY and our website: http://www.tunnelinggroup.pl/software/ for major platforms: Linux/Unix, Windows and Mac OS X. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12859-018-2294-z) contains supplementary material, which is available to authorized users.…”
Publicado 2018
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