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20061“…Found in all eukaryotes(7), RBRs regulate processes such as translation(8) and immune signaling(9). RBRs contain a canonical C3HC4-type RING, followed by two conserved Cys/His-rich Zn(2+)-binding domains, In-Between-RING (IBR) and RING2 domains, which together define this E3 family(7). …”
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20062por Todt, Tilman J., Wels, Michiel, Bongers, Roger S., Siezen, Roland S., van Hijum, Sacha A. F. T., Kleerebezem, Michiel“…Various sigma factors have been described that recognize, and bind to specific DNA sequence motifs in promoter sequences. The canonical sigma factor σ(70) is commonly involved in transcription of the cell's housekeeping genes, which is mediated by the conserved σ(70) promoter sequence motifs. …”
Publicado 2012
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20063por Bouzas-Rodríguez, Jimena, Zárraga-Granados, Gabriela, Sánchez-Carbente, Maria del Rayo, Rodríguez-Valentín, Rocío, Gracida, Xicotencatl, Anell-Rendón, Dámaris, Covarrubias, Luis, Castro-Obregón, Susana“…The activity of NR4A1 was necessary for IGF1R-induced cell death, as well as for a canonical model of cell death by autophagy induced by the presence of a pan-caspase inhibitor, suggesting that NR4A1 is a general modulator of this kind of cell death. …”
Publicado 2012
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20064por Tan, Yue Ying, Kodzius, Rimantas, Tay, Boon-Hui, Tay, Alice, Brenner, Sydney, Venkatesh, Byrappa“…Furthermore, both coding and noncoding transcripts of the elephant shark use the same proportion of canonical polyadenylation sites. Besides BLASTX searches, protein-coding transcripts were annotated by Gene Ontology, InterPro domain, and KEGG pathway analyses. …”
Publicado 2012
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20065“…BACKGROUND: Mammalian cells employ at least two subpathways of non-homologous end-joining for the repair of ionizing radiation induced DNA double strand breaks: The canonical DNA-PK-dependent form of non-homologous end-joining (D-NHEJ) and an alternative, slowly operating, error-prone backup pathway (B-NHEJ). …”
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20066“…Mutational analysis showed that the canonical HP1-binding pentapeptide motif PXVXL in the N-terminus of RNF123 was required for binding to HP1 proteins and targeting them for degradation. …”
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20067“…Generally, stable substrates (boulders, cobbles, and rooted plants) supported significantly higher chironomids richness, abundance, and diversity than unstable ones (gravel—sand). Canonical correspondence analysis revealed that detritus (leaves, seeds, and biomass), macrophyte biomass, and secondarily hydraulic variables had high explanatory power on chironomids species composition and structure. …”
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20068por Ioudinkova, Elena S., Barat, Ana, Pichugin, Andrey, Markova, Elena, Sklyar, Ilya, Pirozhkova, Iryna, Robin, Chloe, Lipinski, Marc, Ogryzko, Vasily, Vassetzky, Yegor S., Razin, Sergey V.“…METHODS: We have generated HeLa S3 cell lines stably expressing epitope-tagged versions of macroH2A1.1, H2A.Bbd or canonical H2A and analyzed genomic distribution of the tagged histones using ChIP-on-chip technique. …”
Publicado 2012
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20069“…Surprisingly, H3-H4 exists as a dimer rather than as a canonical tetramer at mid-to-low nanomolar concentrations. …”
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20070“…Two other labeled fragments lack ATP-binding consensus motifs and may form non-canonical ATP-binding sites. Based on domain topology in the 3D structure of RyR1 it is also conceivable that the identified ATP-binding regions, despite their wide separation in the primary sequence, may actually constitute the same non-contiguous ATP-binding pocket within the channel tetramer.…”
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20071por Benachour, Hamanou, Bastogne, Thierry, Toussaint, Magali, Chemli, Yosra, Sève, Aymeric, Frochot, Céline, Lux, François, Tillement, Olivier, Vanderesse, Régis, Barberi-Heyob, Muriel“…In a first step, a multivariate analysis of variance associated with a canonical analysis of the obtained normalized cell index (NCI) values allowed us to identify different relevant time periods following nanoparticles exposure. …”
Publicado 2012
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20072por Kluber, Laurel A., Carrino-Kyker, Sarah R., Coyle, Kaitlin P., DeForest, Jared L., Hewins, Charlotte R., Shaw, Alanna N., Smemo, Kurt A., Burke, David J.“…Ectomycorrhizal richness and root tip abundance were negatively correlated with the moderately available P pools, while the relative percent of tips colonized by Ascomycetes was positively correlated with soil pH. Canonical correspondence analysis revealed regional, but not treatment, differences in AM communities, while EcM communities had both treatment and regional differences. …”
Publicado 2012
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20073“…Bioinformatics and systems biology analyses showed 31 dysregulated genes, 10 affected canonical molecular pathways including a number of genes involved in mitochondrial enzymes for oxidative phosphorylation, mitogen-activated protein Kinase (MAP), peroxisome proliferator-activated protein (PPAP), apoptosis signaling, and genes responsible for long-term potentiation of Alzheimer's and Parkinson's diseases. …”
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20074por Maina, John N“…From the primeval time when the transformation of unicellular organisms to multicellular ones occurred by systematic accretion of cells, BM has been perpetually conserved. Canonical signalling, transcriptional pathways, and other instructive molecular factors are commonly employed within and across species, tissues, and stages of development. …”
Publicado 2012
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20075“…BACKGROUND: MicroRNA (miRNA) are small non-coding RNA molecules which function as nucleic acid-based specificity factors in the universal RNA binding complex known as the RNA induced silencing complex (RISC). In the canonical gene-silencing pathway, these activated RISC particles are associated with RNA decay and gene suppression, however, there is evidence to suggest that in some circumstances they may also stabilise their target RNA and even enhance translation. …”
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20076por Rivera, L, Jiménez-Zurdo, Jose I, Rivas, R, Dazzo, F, Velázquez, E, Martínez-Molina, E, Hirsch, Ann M, Mateos, Pedro F“…We also investigated the involvement in cellulose production and biofilm formation of celC gene encoding an endoglucanase (CelC2) that is required for canonical symbiotic root hair infection by Rhizobium leguminosarum bv. trifolii. …”
Publicado 2012
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20077por Burén, Stefan, Ortega-Villasante, Cristina, Ötvös, Krisztina, Samuelsson, Göran, Bakó, László, Villarejo, Arsenio“…These results indicate that early trafficking of the plastid glycoprotein CAH1 depends on canonical vesicular transport mechanisms operating between the endoplasmic reticulum and Golgi apparatus.…”
Publicado 2012
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20078“…This study examined the cross-talk between PPARγ2 and β-catenin, a key mediator of canonical Wnt signaling, on MSC lineage determination. …”
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20079“…This process, referred to as enrichment analysis, profiles a gene-set, and is widely used to makes sense of the results of high-throughput experiments. The canonical example of enrichment analysis is when the output dataset is a list of genes differentially expressed in some condition. …”
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20080“…Absence of D2R signalling in the hippocampus leads to activation (dephosphorylation) of glycogen synthase kinase 3β (GSK-3β) after KA (20 mg/kg), which is not associated with a change in the phosphorylation of the GSK-3β regulator Akt at the canonical threonine 308 residue. In the present study, we investigated alternative pathways responsible for the activation of GSK-3β in the hippocampus of the D2R−/− mice 24 h following KA-induced seizures. …”
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