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20861por Rice, K L, Lin, X, Wolniak, K, Ebert, B L, Berkofsky-Fessler, W, Buzzai, M, Sun, Y, Xi, C, Elkin, P, Levine, R, Golub, T, Gilliland, D G, Crispino, J D, Licht, J D, Zhang, W“…Combined SNP and gene expression analysis identified aberrations affecting components of a non-canonical PRC2 complex (EZH1, SUZ12 and JARID2) and genes comprising a ‘HSC signature' (MLLT3, SMARCA2 and PBX1). …”
Publicado 2011
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20862por Li, Haiquan, Lee, Younghee, Chen, James L, Rebman, Ellen, Li, Jianrong, Lussier, Yves A“…Taken together, these findings provide the framework for investigating drug targets with unbiased functional biomolecular networks rather than worn-out single-gene and subjective canonical pathway approaches.…”
Publicado 2012
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20863por Regan, Kelly, Wang, Kanix, Doughty, Emily, Li, Haiquan, Li, Jianrong, Lee, Younghee, Kann, Maricel G, Lussier, Yves A“…SPAN network modeling extended the canonical pathway of AD (KEGG) with 26 new protein interactions (empirical p<0.0001). …”
Publicado 2012
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20864por Kim, Hyunwook, Kang, Shin-Wook, Yoo, Tae-Hyun, Kim, Myoung Soo, Kim, Soon Il, Kim, Yu Seun, Choi, Kyu Hun“…BACKGROUND: In addition to its canonical role in musculoskeletal health, several reports have demonstrated that serum vitamin D level may influence kidney function. …”
Publicado 2012
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20865por Ribeiro, Ricardo, Monteiro, Cátia, Catalán, Victoria, Hu, Pingzhao, Cunha, Virgínia, Rodríguez, Amaia, Gómez-Ambrosi, Javier, Fraga, Avelino, Príncipe, Paulo, Lobato, Carlos, Lobo, Francisco, Morais, António, Silva, Vitor, Sanches-Magalhães, José, Oliveira, Jorge, Pina, Francisco, Lopes, Carlos, Medeiros, Rui, Frühbeck, Gema“…Ingenuity Pathway Analysis (IPA) was used to investigate gene ontology, canonical pathways and functional networks. RESULTS: In the PP adipose tissue of OB/OW subjects, we found altered expression of genes encoding molecules involved in adipogenic/anti-lipolytic, proliferative/anti-apoptotic, and mild immunoinflammatory processes (for example, FADS1, down-regulated, and LEP and ANGPT1, both up-regulated). …”
Publicado 2012
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20866Type I interferon and pattern recognition receptor signaling following particulate matter inhalationpor Erdely, Aaron, Antonini, James M, Salmen-Muniz, Rebecca, Liston, Angie, Hulderman, Tracy, Simeonova, Petia P, Kashon, Michael L, Li, Shengqiao, Gu, Ja K, Stone, Samuel, Chen, Bean T, Frazer, David G, Zeidler-Erdely, Patti C“…In addition, pulmonary expression of interferon α and β and Irf7 specific pattern recognition receptors (PRR) and signaling molecules (Ddx58, Ifih1, Dhx58, ISGF3) were induced, an effect that showed specificity when compared to other inflammatory exposures. Also, a canonical pathway indicated a coordinated response of multiple PRR and associated signaling molecules (Tlr7, Tlr2, Clec7a, Nlrp3, Myd88) to inhalation of GMA-SS. …”
Publicado 2012
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20867por Goto, Kosaku, Iso, Tatsuya, Hanaoka, Hirofumi, Yamaguchi, Aiko, Suga, Toshihiro, Hattori, Akinari, Irie, Yasunori, Shinagawa, Yuji, Matsui, Hiroki, Syamsunarno, Mas Rizky A. A., Matsui, Miki, Haque, Anwarul, Arai, Masashi, Kunimoto, Fumio, Yokoyama, Tomoyuki, Endo, Keigo, Gonzalez, Frank J., Kurabayashi, Masahiko“…Luciferase reporter constructs of the Fabp4 and CD36 promoters were markedly activated by pioglitazone in HCMECs through canonical PPAR‐responsive elements. Activation of PPARγ facilitated FA uptake by HCMECs, which was partially inhibited by knockdown of either FABP4 or CD36. …”
Publicado 2013
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20868por Sen, Shurjo K, Barb, Jennifer J, Cherukuri, Praveen F, Accame, David S, Elkahloun, Abdel G, Singh, Larry N, Lee-Lin, Shih-Queen, Program, NISC Comparative Sequencing, Kolodgie, Frank D, Cheng, Qi, Zhao, XiaoQing, Chen, Marcus Y, Arai, Andrew E, Green, Eric D, Mullikin, James C, Munson, Peter J, Biesecker, Leslie G“…CONCLUSIONS: We present a pilot study for transcriptome involvement in coronary artery calcification and demonstrate how RNA-Seq analyses using LCLs as a tissue surrogate may yield fruitful results in a clinical sequencing project. In addition to canonical gene expression, we present candidate variants from alternative splicing and novel transcript detection, which have been unexplored in the context of this disease.…”
Publicado 2014
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20869por Funnell, Alister PW, Vernimmen, Douglas, Lim, Wooi F, Mak, Ka Sin, Wienert, Beeke, Martyn, Gabriella E, Artuz, Crisbel M, Burdach, Jon, Quinlan, Kate GR, Higgs, Douglas R, Whitelaw, Emma, Pearson, Richard CM, Crossley, Merlin“…Inspection of the mouse and human α-globin promoters revealed a number of canonical KLF-binding sites, and indeed, KLF3 was shown to bind to these regions both in vitro and in vivo. …”
Publicado 2014
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20870por Dunican, Donncha S, Cruickshanks, Hazel A, Suzuki, Masako, Semple, Colin A, Davey, Tracey, Arceci, Robert J, Greally, John, Adams, Ian R, Meehan, Richard R“…BACKGROUND: DNA methylation contributes to genomic integrity by suppressing repeat-associated transposition. In addition to the canonical DNA methyltransferases, several auxiliary chromatin factors are required to maintain DNA methylation at intergenic and satellite repeats. …”
Publicado 2013
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20871por Vannini, Eleonora, Panighini, Anna, Cerri, Chiara, Fabbri, Alessia, Lisi, Simonetta, Pracucci, Enrico, Benedetto, Nicola, Vannozzi, Riccardo, Fiorentini, Carla, Caleo, Matteo, Costa, Mario“…To compare CNF1 with a canonical antitumoral drug, we infused temozolomide (TMZ) via minipumps for 1 week in an additional animal group. …”
Publicado 2014
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20872por Moretti, Debora Monteiro, Ahuja, Lalima Gagan, Nunes, Rodrigo Dutra, Cudischevitch, Cecília Oliveira, Daumas-Filho, Carlos Renato Oliveira, Medeiros-Castro, Priscilla, Ventura-Martins, Guilherme, Jablonka, Willy, Gazos-Lopes, Felipe, Senna, Raquel, Sorgine, Marcos Henrique Ferreira, Hartfelder, Klaus, Capurro, Margareth, Atella, Georgia Correa, Mesquita, Rafael Dias, Silva-Neto, Mário Alberto Cardoso“…In mammals, PTPs play a key role in the modulation of canonical pathways involved in metabolism and immunity. …”
Publicado 2014
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20873por Lev, Sophie, Crossett, Ben, Cha, So Young, Desmarini, Desmarini, Li, Cecilia, Chayakulkeeree, Methee, Wilson, Christabel F., Williamson, P. R., Sorrell, Tania C., Djordjevic, Julianne T.“…By combining a one-dimensional electrophoresis step with mass spectrometry, a canonically secreted acid phosphatase, CNAG_02944 (Aph1), was identified in the secretome of the highly virulent serotype A strain H99. …”
Publicado 2014
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20874por Wong, Daniel, Lee, Wanseon, Humburg, Peter, Makino, Seiko, Lau, Evelyn, Naranbhai, Vivek, Fairfax, Benjamin P, Chan, Kenneth, Plant, Katharine, Knight, Julian C“…We confirm recruitment to proximal promoter sequences in MHC class II genes and more distally involving the canonical CIITA enhanceosome. Overall, we map 843 CIITA binding intervals involving 442 genes and find 95% of intervals are located outside the MHC and 60% not associated with RFX5 binding. …”
Publicado 2014
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20875por Chipman, Ariel D., Ferrier, David E. K., Brena, Carlo, Qu, Jiaxin, Hughes, Daniel S. T., Schröder, Reinhard, Torres-Oliva, Montserrat, Znassi, Nadia, Jiang, Huaiyang, Almeida, Francisca C., Alonso, Claudio R., Apostolou, Zivkos, Aqrawi, Peshtewani, Arthur, Wallace, Barna, Jennifer C. J., Blankenburg, Kerstin P., Brites, Daniela, Capella-Gutiérrez, Salvador, Coyle, Marcus, Dearden, Peter K., Du Pasquier, Louis, Duncan, Elizabeth J., Ebert, Dieter, Eibner, Cornelius, Erikson, Galina, Evans, Peter D., Extavour, Cassandra G., Francisco, Liezl, Gabaldón, Toni, Gillis, William J., Goodwin-Horn, Elizabeth A., Green, Jack E., Griffiths-Jones, Sam, Grimmelikhuijzen, Cornelis J. P., Gubbala, Sai, Guigó, Roderic, Han, Yi, Hauser, Frank, Havlak, Paul, Hayden, Luke, Helbing, Sophie, Holder, Michael, Hui, Jerome H. L., Hunn, Julia P., Hunnekuhl, Vera S., Jackson, LaRonda, Javaid, Mehwish, Jhangiani, Shalini N., Jiggins, Francis M., Jones, Tamsin E., Kaiser, Tobias S., Kalra, Divya, Kenny, Nathan J., Korchina, Viktoriya, Kovar, Christie L., Kraus, F. Bernhard, Lapraz, François, Lee, Sandra L., Lv, Jie, Mandapat, Christigale, Manning, Gerard, Mariotti, Marco, Mata, Robert, Mathew, Tittu, Neumann, Tobias, Newsham, Irene, Ngo, Dinh N., Ninova, Maria, Okwuonu, Geoffrey, Ongeri, Fiona, Palmer, William J., Patil, Shobha, Patraquim, Pedro, Pham, Christopher, Pu, Ling-Ling, Putman, Nicholas H., Rabouille, Catherine, Ramos, Olivia Mendivil, Rhodes, Adelaide C., Robertson, Helen E., Robertson, Hugh M., Ronshaugen, Matthew, Rozas, Julio, Saada, Nehad, Sánchez-Gracia, Alejandro, Scherer, Steven E., Schurko, Andrew M., Siggens, Kenneth W., Simmons, DeNard, Stief, Anna, Stolle, Eckart, Telford, Maximilian J., Tessmar-Raible, Kristin, Thornton, Rebecca, van der Zee, Maurijn, von Haeseler, Arndt, Williams, James M., Willis, Judith H., Wu, Yuanqing, Zou, Xiaoyan, Lawson, Daniel, Muzny, Donna M., Worley, Kim C., Gibbs, Richard A., Akam, Michael, Richards, Stephen“…We see an intriguing linkage between the absence of any known photosensory proteins in a blind organism and the additional absence of canonical circadian clock genes. The phylogenetic position of myriapods allows us to identify where in arthropod phylogeny several particular molecular mechanisms and traits emerged. …”
Publicado 2014
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20876por Rogato, Alessandra, Richard, Hugues, Sarazin, Alexis, Voss, Björn, Cheminant Navarro, Soizic, Champeimont, Raphaël, Navarro, Lionel, Carbone, Alessandra, Hess, Wolfgang R, Falciatore, Angela“…Remarkably, 25-30 nt sRNAs display a well-defined and unprecedented 180 nt-long periodic distribution at several highly methylated regions that awaits characterization. While canonical miRNAs are not detectable, other 21-25 nt sRNAs of unknown origin are highly expressed. …”
Publicado 2014
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20877por Kagawa, Shingo, Natsuizaka, Mitsuteru, Whelan, Kelly A., Facompre, Nicole, Naganuma, Seiji, Ohashi, Shinya, Kinugasa, Hideaki, Egloff, Ann Marie, Basu, Devraj, Gimotty, Phyllis A., Klein-Szanto, Andres J, Bass, Adam, Wong, Kwok-Kin, Diehl, J. Alan, Rustgi, Anil K., Nakagawa, Hiroshi“…Notch-induced senescence involves canonical CSL/RBPJ-dependent transcriptional activity and the p16(INK4A)-Rb pathway. …”
Publicado 2014
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20878por Rossi, Silvia, Motta, Caterina, Studer, Valeria, Macchiarulo, Giulia, Volpe, Elisabetta, Barbieri, Francesca, Ruocco, Gabriella, Buttari, Fabio, Finardi, Annamaria, Mancino, Raffaele, Weiss, Sagit, Battistini, Luca, Martino, Gianvito, Furlan, Roberto, Drulovic, Jelena, Centonze, Diego“…IL-1β-induced neuronal swelling was also blocked by PFT, and IL-1β increased the expression of p21, a canonical downstream target of activated p53. Consistent with these in vitro results, the Pro/Pro genotype of p53, associated with low efficiency of transcription of p53-regulated genes, abrogated the association between IL-1β cerebrospinal fluid (CSF) levels and disability progression in RRMS patients. …”
Publicado 2014
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20879por Tao, Yu, Zheng, Weisheng, Jiang, Yonghua, Ding, Guitao, Hou, Xinfeng, Tang, Yitao, Li, Yueying, Gao, Shuai, Chang, Gang, Zhang, Xiaobai, Liu, Wenqiang, Kou, Xiaochen, Wang, Hong, Jiang, Cizhong, Gao, Shaorong“…Pairwise comparisons showed that the nucleosome organizations in the iPSCs, regardless of the iPSCs’ tissue of origin, were nearly identical to the ESCs, but distinct from mouse embryonic fibroblasts (MEF). There is a canonical nucleosome arrangement of -1, nucleosome depletion region, +1, +2, +3, and so on nucleosomes around the transcription start sites of active genes whereas only a nucleosome occupies silent transcriptional units. …”
Publicado 2014
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20880“…Knockdown of GLI1 expression in claudin-low cell lines resulted in reduced cell viability, motility, clonogenicity, self-renewal, and reduced tumor growth of orthotopic xenografts. We observed non-canonical activation of GLI1 in claudin-low and EMT cell lines, and identified crosstalk with the NFκB pathway. …”
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