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1021por Boninsegna, Lorenzo, Yildirim, Asli, Polles, Guido, Zhan, Yuxiang, Quinodoz, Sofia A., Finn, Elizabeth H., Guttman, Mitchell, Zhou, Xianghong Jasmine, Alber, Frank“…We demonstrate that multimodal data integration can compensate for systematic errors in some of the data and can greatly increase accuracy and coverage of genome structure models. …”
Publicado 2022
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1022“…We also highlight the lack of data benchmarks and the need to develop tools for data integration from a statistical viewpoint, designed in the spirit of reproducible research.…”
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1023“…In this review, we first introduce recent developments in single-cell multi-omics in general and then focus on the available data integration strategies. The integration approaches are divided into three categories: early, intermediate, and late data integration. …”
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1024“…INTRODUCTION: Data integration by local and state governments is undertaken for the public good to support the interconnected needs of families and communities. …”
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1025“…In this comprehensive review, we survey the current landscape of scRNA-seq analysis methods and tools, focusing on count modeling, cell-type annotation, data integration, including spatial transcriptomics, and the inference of cell–cell communication. …”
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1026por Thessen, Anne E., Bogdan, Paul, Patterson, David J., Casey, Theresa M., Hinojo-Hinojo, César, de Lange, Orlando, Haendel, Melissa A.“…We identify major challenges to data integration and present a vision for a “Data as a Service”-oriented architecture to promote reuse of data for discovery. …”
Publicado 2021
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1027“…BACKGROUND: Epidemiology is a data-intensive and multi-disciplinary subject, where data integration, curation and sharing are becoming increasingly relevant, given its global context and time constraints. …”
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1028“…We review some of the most frequently used data integration methods and outline research areas where multi-omics significantly benefit our understanding of the process and outcome of the malignant transformation. …”
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1029“…This study explores methodologies for the data integration of antimicrobial use (AMU) and antimicrobial resistance (AMR) results within and across three food animal species, surveyed at the farm-level by the Canadian Integrated Program for Antimicrobial Resistance Surveillance (CIPARS). …”
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1030“…To guide the choice of data integration tools, we group them into the scientific objectives they aim to address. …”
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1031por Chen, Chongyang, Wang, Jing, Pan, Donghui, Wang, Xinyu, Xu, Yuping, Yan, Junjie, Wang, Lizhen, Yang, Xifei, Yang, Min, Liu, Gong‐Ping“…Most of the current reviews focus on describing the development of multi‐omics technologies, data integration, and application to a particular disease; however, few of them provide a comprehensive and systematic introduction of multi‐omics. …”
Publicado 2023
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1032por Kuleshov, Maxim V, Diaz, Jennifer E L, Flamholz, Zachary N, Keenan, Alexandra B, Lachmann, Alexander, Wojciechowicz, Megan L, Cagan, Ross L, Ma’ayan, Avi“…High-throughput experiments produce increasingly large datasets that are difficult to analyze and integrate. While most data integration approaches focus on aligning metadata, data integration can be achieved by abstracting experimental results into gene sets. …”
Publicado 2019
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1033por Ali, Shabana Amanda, Pastrello, Chiara, Kaur, Navdeep, Peffers, Mandy J., Ormseth, Michelle J., Jurisica, Igor“…Studies to date have focused on elucidating individual long non-coding-microRNA-gene target axes and circular RNA-microRNA-gene target axes, with a paucity of data integrating experimentally validated effects of non-coding RNAs. …”
Publicado 2021
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1034“…However, fast and computationally inexpensive tools for standardization of cell-type annotation and data integration are still needed in order to increase research inclusivity. …”
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1035“…A commentary on “Multi-omics single-cell data integration and regulatory inference with graph-linked embedding”…”
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1036Integrating post-genomic approaches as a strategy to advance our understanding of health and disease“…This review aims to highlight the need for and problems with complex data integration, and proposes a framework for data integration. …”
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1037“…In this article we introduce a flexible model-based approach to data integration to address these current limitations: COMBI. …”
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1038por Stefancsik, Ray, Balhoff, James P., Balk, Meghan A., Ball, Robyn L., Bello, Susan M., Caron, Anita R., Chesler, Elissa J., de Souza, Vinicius, Gehrke, Sarah, Haendel, Melissa, Harris, Laura W., Harris, Nomi L., Ibrahim, Arwa, Koehler, Sebastian, Matentzoglu, Nicolas, McMurry, Julie A., Mungall, Christopher J., Munoz-Torres, Monica C., Putman, Tim, Robinson, Peter, Smedley, Damian, Sollis, Elliot, Thessen, Anne E., Vasilevsky, Nicole, Walton, David O., Osumi-Sutherland, David“…The term components in OBA provide semantic links and enable knowledge and data integration across specialised research community boundaries, thereby breaking silos. …”
Publicado 2023
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1039por Clabbers, Max T. B., Gruene, Tim, Parkhurst, James M., Abrahams, Jan Pieter, Waterman, David G.“…These novel features, combined with the existing tools in DIALS, make data integration and refinement feasible for electron crystallography, even in difficult cases.…”
Publicado 2018
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1040“…A variety of ontology, machine learning, deep learning and fuzzy logic-based solutions are being developed for heterogeneous data integration. The proposed model concentrates on the automatic ontology-based data integration method that can be effectively deployed and used in the healthcare domain. …”
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