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1401“…The authors also provide phenotypic data in a semantic form to facilitate data integration and accessibility across taxa and provide an updated phenotype bank of morphological characters for megaspilid taxonomic treatments. …”
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1402por Wang, Ying, Xu, Pei, Wu, Xiaohua, Wu, Xinyi, Wang, Baogen, Huang, Yunping, Hu, Yaowen, Lin, Jiandong, Lu, Zhongfu, Li, Guojing“…GourdBase consists of six main modules that store and interlink multi-omic data: the genome (with transcriptomic data integrated) module, the phenome module, the markers/QTLs module, the maps (genetic, physical and comparative) module, the cultivars module, and the publications module. …”
Publicado 2018
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1403por Manzoni, Claudia, Kia, Demis A, Vandrovcova, Jana, Hardy, John, Wood, Nicholas W, Lewis, Patrick A, Ferrari, Raffaele“…As other areas of biomedical sciences, including metabolomics, epigenomics and pharmacogenomics, are moving towards the omics scale, we are witnessing the rise of inter-disciplinary data integration strategies to support a better understanding of biological systems and eventually the development of successful precision medicine. …”
Publicado 2016
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1404por Spooner, William, McLaren, William, Slidel, Timothy, Finch, Donna K., Butler, Robin, Campbell, Jamie, Eghobamien, Laura, Rider, David, Kiefer, Christine Mione, Robinson, Matthew J., Hardman, Colin, Cunningham, Fiona, Vaughan, Tristan, Flicek, Paul, Huntington, Catherine Chaillan“…Haplosaurus computes protein haplotypes from pre-existing chromosomally-phased genomic variation data. Integration into the Ensembl resource provides rapid and detailed protein haplotypes retrieval. …”
Publicado 2018
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1405por Haux, Reinhold“…Then the initiative’s four consortia DIFUTURE (Data Integration for Future Medicine), HiGHmed (Heidelberg-Göttingen-Hannover Medical Informatics), MIRACUM (Medical Informatics in Research and Care in University Medicine), and SMITH (Smart Medical Information Technology for Healthcare) present their concepts and plans. …”
Publicado 2018
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1406por Rotenberg, David J., Chang, Qing, Potapova, Natalia, Wang, Andy, Hon, Marcia, Sanches, Marcos, Bogetic, Nikola, Frias, Nathan, Liu, Tommy, Behan, Brendan, El-Badrawi, Rachad, Strother, Stephen C., Evans, Susan G., Mikkelsen, Jordan, Gee, Tom, Dong, Fan, Arnott, Stephen R., Laing, Shuai, Dharsee, Moyez, Vaccarino, Anthony L., Javadi, Mojib, Evans, Kenneth R., Jankowicz, Damian“…To help realize the potential of multi-modal data integration for the study of mental illness, the Centre for Addiction and Mental Health (CAMH) constructed a centralized data capture, visualization and analytics environment—the CAMH Neuroinformatics Platform—based on the Ontario Brain Institute (OBI) Brain-CODE architecture, towards the curation of a standardized, consolidated psychiatric hospital-wide research dataset, directly coupled to high performance computing resources.…”
Publicado 2018
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1407por Jiang, Ming, Zhang, Ju, Qian, Lili, Miao, Yuhui, Song, Weiguo, Liu, Hanyuan, Li, Rui“…Here, clinical MOZ expression analysis combined with data integration from the TCGA and GEO databases indicated that a low level of MOZ was associated with poor prognosis. …”
Publicado 2018
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1408por Lee, Amy H., Shannon, Casey P., Amenyogbe, Nelly, Bennike, Tue B., Diray-Arce, Joann, Idoko, Olubukola T., Gill, Erin E., Ben-Othman, Rym, Pomat, William S., van Haren, Simon D., Cao, Kim-Anh Lê, Cox, Momoudou, Darboe, Alansana, Falsafi, Reza, Ferrari, Davide, Harbeson, Daniel J., He, Daniel, Bing, Cai, Hinshaw, Samuel J., Ndure, Jorjoh, Njie-Jobe, Jainaba, Pettengill, Matthew A., Richmond, Peter C., Ford, Rebecca, Saleu, Gerard, Masiria, Geraldine, Matlam, John Paul, Kirarock, Wendy, Roberts, Elishia, Malek, Mehrnoush, Sanchez-Schmitz, Guzmán, Singh, Amrit, Angelidou, Asimenia, Smolen, Kinga K., Brinkman, Ryan R., Ozonoff, Al, Hancock, Robert E. W., van den Biggelaar, Anita H. J., Steen, Hanno, Tebbutt, Scott J., Kampmann, Beate, Levy, Ofer, Kollmann, Tobias R.“…Systems biology and innovative data integration can provide fresh insights into the molecular ontogeny of the first week of life, a dynamic developmental phase that is key for health and disease.…”
Publicado 2019
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1409“…The vision of precision medicine relies on the integration of large-scale clinical, molecular and environmental datasets. Data integration may be thought of along two axes: data fusion across institutions, and data fusion across modalities. …”
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1410“…The research areas in 2018 were mainly related to the ontology-based data integration for phenotype-genotype association mining, the design of ontologies and their application, and the semantic annotation of clinical texts. …”
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1411por Fonti, Giulia, Marcaida, Maria J, Bryan, Louise C, Träger, Sylvain, Kalantzi, Alexandra S, Helleboid, Pierre-Yves JL, Demurtas, Davide, Tully, Mark D, Grudinin, Sergei, Trono, Didier, Fierz, Beat, Dal Peraro, Matteo“…This work sheds light on the overall organization of the full-length protein combining solution scattering data, integrative modeling, and single-molecule experiments. …”
Publicado 2019
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1412por Benis, Nirupama, Wells, Jerry M., Smits, Mari A., Kar, Soumya Kanti, van der Hee, Bart, dos Santos, Vitor A. P. Martins, Suarez-Diez, Maria, Schokker, Dirkjan“…To improve our understanding of this plasticity, we performed a high-level data integration of 14 whole-genome transcriptomics datasets from samples of intestinal mouse mucosa. …”
Publicado 2019
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1413por Lock, Antonia, Harris, Midori A, Rutherford, Kim, Hayles, Jacqueline, Wood, Valerie“…Maximizing the impact and value of scientific research requires efficient knowledge distribution, which increasingly depends on the integration of standardized published data into online databases. To make data integration more comprehensive and efficient for fission yeast research, PomBase has pioneered a community curation effort that engages publication authors directly in FAIR-sharing of data representing detailed biological knowledge from hypothesis-driven experiments. …”
Publicado 2020
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1414por Jiang, Shufan, Angarita, Rafael, Chiky, Raja, Cormier, Stéphane, Rousseaux, Francis“…Semantic technologies and linked data provide a possibility for data integration and for automatic information extraction. …”
Publicado 2020
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1415por Braun, Maya, Sharon, Elad, Unterman, Irene, Miller, Maya, Shtern, Anna Mellul, Benenson, Shmuel, Vainstein, Alexander, Tabach, Yuval“…We identified the co-evolved protein network and pinpointed a list of drugs that target this network by using data integration from different sources. Our computational analysis found widely used drugs such as nonsteroidal anti-inflammatory drugs and vasodilators. …”
Publicado 2020
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1416“…A huge amount of atomized biological data collected in various databases and the need for a description of their relation by theoretical methods causes the development of data integration methods. The omics data analysis by integration of biological knowledge with mathematical procedures implemented in the OmicsON R library is presented in the paper. …”
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1417por Zou, Kelly H., Li, Jim Z., Salem, Lobna A., Imperato, Joseph, Edwards, Jon, Ray, Amrit“…To realize the potential power of RWD and RWE, challenges related to data integration, access, interoperability, standardization of analytical methods, quality control, security, privacy protection, and ethical standards for data use must be addressed. …”
Publicado 2020
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1418por Afshari, Roya, Pillidge, Christopher J., Dias, Daniel A., Osborn, A. Mark, Gill, Harsharn“…In this study, bacterial 16S rRNA-gene sequencing, untargeted metabolomics (gas chromatography-mass spectrometry) and data integration analyses were used to characterize and differentiate commercial Cheddar cheeses of varying maturity made by the same and different manufacturers. …”
Publicado 2020
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1419“…We highlight the importance of computational modeling and data integration to derive an actionable understanding of RAS signaling that will allow us to design new mechanism-based therapies for RAS mutated cancers.…”
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1420por Pavel, Alisa, del Giudice, Giusy, Federico, Antonio, Di Lieto, Antonio, Kinaret, Pia A S, Serra, Angela, Greco, Dario“…In this work, we applied data integration methods to develop a Unified Knowledge Space (UKS) and used it to identify a new set of genes associated with SARS-CoV-2 host response, both in vitro and in vivo. …”
Publicado 2021
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