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  1. 1441
    por Gao, Jingyuan, Yi, Xinzhu, Wang, Zhang
    Publicado 2023
    “…However, the application of multi-omics in respiratory microbiome remains with unique challenges from sample processing, data integration, and downstream validation. In this review, we first introduce the respiratory sample types and omic data types applicable to studying the respiratory microbiome. …”
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    The application of multi-omics in the respiratory microbiome: Progresses, challenges and promises
  2. 1442
    “…Finally, we detail important and challenging aspects of machine learning, meta-analysis, and data integration that researchers will face in order to extend beyond the limited scope of individual studies focused on specific populations.…”
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    Expanding the access of wearable silicone wristbands in community-engaged research through best practices in data analysis and integration
  3. 1443
    “…In order to provide a partial solution to data integration, we report Database of Databases (DoD2007), constructed using html and javascript. …”
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    DoD2007: 1082 molecular biology databases
  4. 1444
    “…To this end, tools for doing data integration of multi-ome data are necessary, and especially interesting in the context of metabolism. …”
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    Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger
  5. 1445
    “…Recent developments were focused on further data integration and improving user friendliness. The underlying protein database based on completely sequenced genomes was greatly expanded and now includes 630 species, compared to 191 in the previous release. …”
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    SMART 6: recent updates and new developments
  6. 1446
    “…We describe the database schema and the methods used for data integration. Furthermore, we describe the functionality of the ConsensusPathDB web interface, where users can search and visualize interaction networks, upload, modify and expand networks in BioPAX, SBML or PSI-MI format, or carry out over-representation analysis with uploaded identifier lists with respect to substructures derived from the integrated interaction network. …”
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    ConsensusPathDB—a database for integrating human functional interaction networks
  7. 1447
    “…In all cases, transcript-based annotations clearly improve the effectiveness of data integration and thus provide a more reliable confirmation of computationally predicted miRNA–mRNA interactions.…”
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    Impact of probe annotation on the integration of miRNA–mRNA expression profiles for miRNA target detection
  8. 1448
    “…As catfish genome sequencing proceeds and ongoing quantitative trait loci (QTL) projects bear fruit, cBARBEL will allow rapid data integration and dissemination within the catfish research community and to interested stakeholders. cBARBEL can be accessed at http://catfishgenome.org.…”
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    The catfish genome database cBARBEL: an informatic platform for genome biology of ictalurid catfish
  9. 1449
    “…Availability: The integrated dataset and a reference implementation of the algorithm as a plug-in for the Ondex data integration framework are available for download at http://bio-nexus.ncl.ac.uk/projects/nogold/ Contact: darren.wilkinson@ncl.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online.…”
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    Bayesian integration of networks without gold standards
  10. 1450
    “…In the last decade, high-throughput experimental methods for studying the functional interactions between gene products (GPs) have been combined with computational approaches based on Bayesian networks for data integration. The result of these computational approaches is an interaction network with weighted links representing connectivity likelihood between two functionally related GPs. …”
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    WNP: A Novel Algorithm for Gene Products Annotation from Weighted Functional Networks
  11. 1451
    “…Summary: InterMine is an open-source data warehouse system that facilitates the building of databases with complex data integration requirements and a need for a fast customizable query facility. …”
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    InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data
  12. 1452
    “…Data integration is a key challenge for modern bioinformatics. …”
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    GnpIS: an information system to integrate genetic and genomic data from plants and fungi
  13. 1453
    por Wang, Xiaojing, Zhang, Bing
    Publicado 2013
    “…This work bridges genomics and proteomics studies and facilitates cross-omics data integration. Availability and implementation: customProDB and related documents are freely available at http://bioconductor.org/packages/2.13/bioc/html/customProDB.html. …”
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    customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search
  14. 1454
    por Vihinen, Mauno
    Publicado 2014
    “…Due to their unambiguous nature, ontological annotations facilitate systematic description and data organization, data integration and mining, and pattern recognition and statistics, as well as development of analysis and prediction tools. …”
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    Variation Ontology for annotation of variation effects and mechanisms
  15. 1455
    “…PEDSnet is implementing a flexible dual data architecture that incorporates two widely used data models and national terminology standards to support multi-institutional data integration, cohort discovery, and advanced analytics that enable rapid learning.…”
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    PEDSnet: a National Pediatric Learning Health System
  16. 1456
    “…Initial goals of the Mid-South CDRN include: (1) expansion of our VU data network to include the VHAN and Greenway systems, (2) developing data integration/interoperability across the three systems, (3) improving our current tools for extracting clinical data, (4) optimization of tools for collection of patient-reported data, and (5) expansion of clinical decision support. …”
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    The Mid-South Clinical Data Research Network
  17. 1457
    “…With coordination by the Chicago Community Trust and the Illinois Medical District Commission, CAPriCORN will model how healthcare institutions can overcome barriers of data integration, marketplace competition, and care fragmentation to develop, test, and implement strategies to improve care for diverse populations and reduce health disparities.…”
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    CAPriCORN: Chicago Area Patient-Centered Outcomes Research Network
  18. 1458
    “…There is an urgent need for a unified resource that integrates trans-disciplinary annotations of emerging and reemerging animal infectious and zoonotic diseases. Such data integration will provide wonderful opportunity for epidemiologists, researchers and health policy makers to make data-driven decisions designed to improve animal health. …”
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    ERAIZDA: a model for holistic annotation of animal infectious and zoonotic diseases
  19. 1459
    “…Some release highlights of this year include new and updated genome browsers for various assemblies, including bonobo and zebrafish; new gene annotation sets; improvements to track and assembly hub support; and a new interactive tool, the “Data Integrator”, for intersecting data from multiple tracks. …”
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    The UCSC Genome Browser database: 2016 update
  20. 1460
    “…In this paper, we present a data integration method based on modified empirical orthogonal function (EOF) analysis to integrate the Moderate Resolution Imaging Spectroradiometer (MODIS) LE product (MOD16) and the Priestley-Taylor LE algorithm of Jet Propulsion Laboratory (PT-JPL) estimate. …”
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    An Empirical Orthogonal Function-Based Algorithm for Estimating Terrestrial Latent Heat Flux from Eddy Covariance, Meteorological and Satellite Observations
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