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12481por Mornico, Damien, Miché, Lucie, Béna, Gilles, Nouwen, Nico, Verméglio, André, Vallenet, David, Smith, Alexander A.T., Giraud, Eric, Médigue, Claudine, Moulin, Lionel“…In this study we used a comparative genomics approach on nine Aeschynomene symbionts representative of their phylogenetic diversity. We produced draft genomes of bradyrhizobial strains representing different phenotypes: five NI photosynthetic strains (STM3809, ORS375, STM3847, STM4509 and STM4523) in addition to the previously sequenced ORS278 and BTAi1 genomes, one photosynthetic strain ORS285 hosting both ND and NI symbiotic systems, and one NI non-photosynthetic strain (STM3843). …”
Publicado 2011
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12482por Paliwal, Vasundhara, Raju, Sajan C., Modak, Arnab, Phale, Prashant S., Purohit, Hemant J.“…Pseudomonas putida CSV86, a plasmid-free strain possessing capability to transfer the naphthalene degradation property, has been explored for its metabolic diversity through genome sequencing. The analysis of draft genome sequence of CSV86 (6.4 Mb) revealed the presence of genes involved in the degradation of naphthalene, salicylate, benzoate, benzylalcohol, p-hydroxybenzoate, phenylacetate and p-hydroxyphenylacetate on the chromosome thus ensuring the stability of the catabolic potential. …”
Publicado 2014
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12483por Wang, Jia, Chen, Dijun, Lei, Yang, Chang, Ji-Wei, Hao, Bao-Hai, Xing, Feng, Li, Sen, Xu, Qiang, Deng, Xiu-Xin, Chen, Ling-Ling“…We have sequenced the draft genome of a double-haploid sweet orange (C. sinensis cv. …”
Publicado 2014
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12484“…A novel BVMO encoding gene was identified from a draft genome sequence of a newly isolated strain of Dietzia. …”
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12485por Reeve, Wayne, De Meyer, Sofie, Terpolilli, Jason, Melino, Vanessa, Ardley, Julie, Rui, Tian, Tiwari, Ravi, Howieson, John, Yates, Ron, O’Hara, Graham, Lu, Megan, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Cliff, Wei, Chia-Lin, Huntemann, Marcel, Han, James, Chen, I-Min, Mavromatis, Konstantinos, Markowitz, Victor, Szeto, Ernest, Ivanova, Natalia, Mikhailova, Natalia, Ovchinnikova, Galina, Pagani, Ioanna, Pati, Amrita, Goodwin, Lynne, Peters, Lin, Pitluck, Sam, Woyke, Tanja, Kyrpides, Nikos“…The 7,761,063 bp high-quality-draft genome is arranged in 8 scaffolds of 236 contigs, contains 7,147 protein-coding genes and 76 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Community Sequencing Program.…”
Publicado 2013
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12486por Terpolilli, Jason, Garau, Giovanni, Hill, Yvette, Tian, Rui, Howieson, John, Bräu, Lambert, Goodwin, Lynne, Han, James, Liolios, Konstantinos, Huntemann, Marcel, Pati, Amrita, Woyke, Tanja, Mavromatis, Konstantinos, Markowitz, Victor, Ivanova, Natalia, Kyrpides, Nikos, Reeve, Wayne“…The 6,402,557 bp standard draft genome is arranged into 307 scaffolds of 307 contigs containing 6,656 protein-coding genes and 79 RNA-only encoding genes. …”
Publicado 2013
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12487por Silverio, Manuella Souza, Rodovalho, Vinícius de Rezende, Bonetti, Ana Maria, de Oliveira, Guilherme Corrêa, Cuadros-Orellana, Sara, Ueira-Vieira, Carlos, Rodrigues dos Santos, Anderson“…Here we present the assembly, annotation, and characterization of a draft mitochondrial genome of the Brazilian stingless bee Melipona scutellaris using Melipona bicolor as a reference organism. …”
Publicado 2014
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12488por Willems, Anne, Tian, Rui, Bräu, Lambert, Goodwin, Lynne, Han, James, Liolios, Konstantinos, Huntemann, Marcel, Pati, Amrita, Woyke, Tanja, Mavrommatis, Konstantinos, Markowitz, Victor, Ivanova, Natalia, Kyrpides, Nikos, Reeve, Wayne“…The 8,410,967 bp high-quality-draft genome is arranged into 268 scaffolds of 270 contigs containing 7,800 protein-coding genes and 85 RNA-only encoding genes, and is one of 100 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.…”
Publicado 2013
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12489por Reeve, Wayne, Parker, Matthew, Tian, Rui, Goodwin, Lynne, Teshima, Hazuki, Tapia, Roxanne, Han, Cliff, Han, James, Liolios, Konstantinos, Huntemann, Marcel, Pati, Amrita, Woyke, Tanja, Mavromatis, Konstantinos, Markowitz, Victor, Ivanova, Natalia, Kyrpides, Nikos“…The 9,633,614 bp improved high quality draft genome is arranged into 160 scaffolds of 1,366 contigs containing 10,864 protein-coding genes and 87 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of a DOE Joint Genome Institute 2010 Community Sequencing Project.…”
Publicado 2014
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12490por Kamada, Mayumi, Hase, Sumitaka, Sato, Kengo, Toyoda, Atsushi, Fujiyama, Asao, Sakakibara, Yasubumi“…Compared with the previous BEST195 draft genome and Marburg 168 genome, we found that incomplete regions in the previous genome sequence were attributed to GC-bias and repetitive sequences, and we also identified some novel genes that are found only in the new genome.…”
Publicado 2014
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12491por Chen, Yi-sheng, Lee, Yun-shien, Wu, Hui-chung, Chiang, Chih-ming, Pan, Shwu-fen, Leong, Kun-hon“…BACKGROUND: Weissellicin L, a novel bacteriocin produced by Weissella hellenica 4–7, was previously characterized but its full amino acid sequence remain unknown. The draft genome sequencing analysis of Weissella hellenica 4–7 was performed and the open reading frame (ORF) encoding the weissellicin L was identified and clarified. …”
Publicado 2014
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12492Publicado 2014“…We used the map to anchor 71.9% of the draft genome assembly and 90.7% of the predicted protein-coding genes. …”
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12493por van der Werf, Mariët J., Takors, Ralf, Smedsgaard, Jørn, Nielsen, Jens, Ferenci, Tom, Portais, Jean Charles, Wittmann, Christoph, Hooks, Mark, Tomassini, Alberta, Oldiges, Marco, Fostel, Jennifer, Sauer, Uwe“…Here we propose, a first draft of minimal requirements to effectively describe the biological context of metabolomics studies that involve microbial or in vitro biological subjects. …”
Publicado 2007
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12494por Ezewudo, Matthew N., Joseph, Sandeep J., Castillo-Ramirez, Santiago, Dean, Deborah, del Rio, Carlos, Didelot, Xavier, Dillon, Jo-Anne, Selden, Richard F., Shafer, William M., Turingan, Rosemary S., Unemo, Magnus, Read, Timothy D.“…As a result of antibiotic resistance, there are now limited options for treating patients. We collected draft genome sequence data and associated metadata data on 76 N. gonorrhoeae strains from around the globe and searched for known determinants of antibiotics resistance within the strains. …”
Publicado 2015
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12495“…Finally, merlin expedites the transition from genomic data to draft metabolic models reconstructions exported in the SBML standard format, allowing the user to have a preliminary view of the biochemical network, which can be manually curated within the environment provided by merlin.…”
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12496“…The brain should then be able, starting from a low-level disparity draft, to integrate all information, including colour and viewpoint perspective, in order to propagate better estimates to higher cortical areas.…”
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12497“…Annotation on the reference genome of the C57BL6/J mouse has been an ongoing project ever since the draft genome was first published. Initially, the principle focus was on the identification of all protein-coding genes, although today the importance of describing long non-coding RNAs, small RNAs, and pseudogenes is recognized. …”
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12498por Razaghi, Emran Mohammad, Tabatabaee, Maryam, Pourramzani, Ali, Shirali Mohammadpour, Reza, Mousazade Moghaddam, Arezou, Yahyavi, Seyyed Taha“…After theoretical delineation and preparation of a draft of the program guideline, two pilot sessions were held. …”
Publicado 2015
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12499por Al-Rubaye, Adnan A. K., Couger, M. Brian, Ojha, Sohita, Pummill, Jeff F., Koon, Joseph A., Wideman, Robert F., Rhoads, Douglas D.“…Comparison of our finished genome to a recent draft genome for a cattle mastitis isolate suggests that future investigations focus on the evolutionary epidemiology of this emerging pathogen of domestic animals.…”
Publicado 2015
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12500“…In order to maximize the power of these investigations and ultimately be able to draft solid biological hypotheses, there is the need for applying multiple tools on the same sequences and merge the obtained results. …”
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