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5741por Son, Hee Jin, Kim, Nayoung, Song, Chin-Hee, Nam, Ryoung Hee, Choi, Soo In, Kim, Joo Sung, Lee, Dong Ho“…Functional capabilities of microbiota were estimated using phylogenetic investigation of communities by reconstruction of unobserved states (PICRUSt) based on Kyoto Encyclopedia of Genes and Genomes database. RESULTS: PCoA and UPGMA tree analysis of beta-diversity demonstrated significant differences in gut microbiota between male and female groups of WT mice, but not of IL-10 KO mice. …”
Publicado 2019
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5742por Li, Hanyu, Long, Junyu, Xie, Fucun, Kang, Kai, Shi, Yue, Xu, Weiyu, Wu, Xiaoqian, Lin, Jianzhen, Xu, Haifeng, Du, Shunda, Xu, Yiyao, Zhao, Haitao, Zheng, Yongchang, Gu, Jin“…Biological function enrichment analysis, including Gene Ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis, was applied. …”
Publicado 2019
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5743“…METHODS: Gene ontology (GO) enrichment and analyses of Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, pathway network, and the ceRNA regulatory network of hsa_circ_0000144 targeting miRNAs and mRNAs were performed with the help of bioinformatics using R language and Perl software. hsa_circ_0000144 expression and circRNA knockdown in GC cell lines were detected using quantitative PCR (qPCR) in vitro. …”
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5744“…DAVID and gene set enrichment analysis were separately used to perform the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses. …”
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5745por Shen, Yuntian, Zhang, Ru, Xu, Liang, Wan, Qiuxian, Zhu, Jianwei, Gu, Jing, Huang, Ziwei, Ma, Wenjing, Shen, Mi, Ding, Fei, Sun, Hualin“…Moreover, the four transcriptional phases were designated as “oxidative stress stage”, “inflammation stage”, “atrophy stage” and “atrophic fibrosis stage”, respectively, which was concluded from Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene ontology (GO) analyses at each transcriptional phase. …”
Publicado 2019
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5746“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis based on GSEA were performed by clusterProfiler software. …”
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5747por Gao, Yiying, Li, Xugang, Gao, Jingjing, Zhang, Zhen, Feng, Yang, Nie, Jihua, Zhu, Wei, Zhang, Shuyu, Cao, Jianping“…There were 31 differential metabolites (16 upregulated and 15 downregulated) between 20 Gy irradiated and nonirradiated lung tissues, including taurine, piperine, 1,2,4-benzenetriol, and lactamide. The Kyoto Encyclopedia of Genes and Genomes–based pathway analysis enriched 32 metabolic pathways between the irradiated and nonirradiated lung tissues, including pyrimidine metabolism, ATP-binding cassette transporters, aminoacyl-tRNA biosynthesis, and β-alanine metabolism. …”
Publicado 2019
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5748por Liu, Jingwei, Liu, Weixin, Li, Hao, Deng, Qiuping, Yang, Meiqi, Li, Xuemei, Liang, Zeng“…Gene ontology (GO) as well as Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis were conducted for the selected genes. …”
Publicado 2019
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5749por Wu, Fan, Sun, Xiaobo, Zou, Bingzhang, Zhu, Peihuang, Lin, Nengqing, Lin, Jingquan, Ji, Kongshu“…The results showed that a total of 3080/1908, 3110/2115 and 2684/1483 genes were up-/down-regulated after 6 h, 12 h and 24 h of treatment, respectively, compared with control check group (CK, 0 h). Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis showed that most of these differentially expressed genes (DEGs) were enriched in energy metabolism, carbohydrate synthesis, cell wall precursor synthesis and hormone regulation pathways. …”
Publicado 2019
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5750“…The DAVID database was used to enrich the PTGs based on gene ontology (GO) and pathway (Kyoto Encyclopedia of Genes and Genomes, KEGG), and the STRING database was used to uncover any protein-protein interactions (PPI) of the PTGs. …”
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5751por Zhao, Mengru, Yuan, Lingyun, Wang, Jie, Xie, Shilei, Zheng, Yushan, Nie, Libing, Zhu, Shidong, Hou, Jinfeng, Chen, Guohu, Wang, Chenggang“…RESULTS: According to the Gene Ontology (GO) term and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses, photosynthesis was significantly enriched after spraying EBR under LT. …”
Publicado 2019
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5752por Su, Dan, Zhang, Dadong, Jin, Jiaoyue, Ying, Lisha, Han, Miao, Chen, Kaiyan, Li, Bin, Wu, Junzhou, Xie, Zhenghua, Zhang, Fanrong, Lin, Yihui, Cheng, Guoping, Li, Jing-Yu, Huang, Minran, Wang, Jinchao, Wang, Kailai, Zhang, Jianjun, Li, Fugen, Xiong, Lei, Futreal, Andrew, Mao, Weimin“…Previous studies from the Cancer Cell Line Encyclopedia (CCLE) project have adopted commercial pan-cancer cell line models to identify drug sensitivity biomarkers. …”
Publicado 2019
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5753por Liao, Xiwen, Yu, Tingdong, Yang, Chengkun, Huang, Ketuan, Wang, Xiangkun, Han, Chuangye, Huang, Rui, Liu, Xiaoguang, Yu, Long, Zhu, Guangzhi, Su, Hao, Qin, Wei, Deng, Jianlong, Zeng, Xianmin, Han, Bowen, Han, Quanfa, Liu, Zhengqian, Zhou, Xin, Liu, Junqi, Gong, Yizhen, Liu, Zhengtao, Huang, Jianlv, Lu, Lei, Ye, Xinping, Peng, Tao“…Gene set enrichment analysis (GSEA), weighted gene co-expression network analysis (WGCNA), gene ontology, the Kyoto Encyclopedia of Genes and Genomes, and risk score model were used for pathway and genes identification. …”
Publicado 2019
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5754“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were performed to identify the biological function of miR-133b. …”
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5755por Qiang, Jun, Khamis, Omyia Ahmed Mohamed, Jiang, Huo Jin, Cao, Zhe Ming, He, Jie, Tao, Yi Fan, Xu, Pao, Bao, Jin Wen“…Annotation analyses using tools at the Gene Ontology and Kyoto Encyclopedia of Genes and Genomes databases showed that the differentially expressed genes were mainly involved in the regulation of immunity and fat metabolism. …”
Publicado 2019
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5756por Moran-Salvador, Eva, Garcia-Macia, Marina, Sivaharan, Ashwin, Sabater, Laura, Zaki, Marco Y.W., Oakley, Fiona, Knox, Amber, Page, Agata, Luli, Saimir, Mann, Jelena, Mann, Derek A.“…HSCs were activated in culture and used in array analyses of messenger RNAs and long noncoding RNAs. Kyoto Encyclopedia of Genes and Genomes pathway analyses identified pathways regulated by MECP2. …”
Publicado 2019
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5757por Yuan, Feng, Yi, Li, Hai, Long, Wang, Yingshuai, Yang, Yihan, Li, Tao, Tong, Luqing, Ma, Haiwen, Liu, Peidong, Ming, Haolang, Ren, Bingcheng, Yu, Shengping, Lin, Yu, Yang, Xuejun“…METHODS: Via The Cancer Genome Atlas (TCGA), French, Sun, and Gene Expression Omnibus (GEO) (GDS3885) datasets, we collected 1231 cases with RNA-seq data and analyzed the functional annotation of Orai2 by gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis. …”
Publicado 2019
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5758por Lin, Fang, Gong, Xin, Yu, Ping, Yue, Aixue, Meng, Qingshu, Zheng, Liang, Chen, Tian, Han, Lu, Cao, Hao, Cao, Jianhong, Liang, Xiaoting, Hu, Hao, Li, Yuan, Liu, Zhongmin, Zhou, Xiaohui, Fan, Huimin“…Furthermore, the Kyoto Encyclopedia of Genes and Genomes pathway analysis revealed that the differentially expressed lncRNA-coexpressed mRNAs between DCM and ICM group were significantly enriched in the natural killer cell mediated cytotoxicity and ras signaling pathway respectively. …”
Publicado 2019
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5759por Li, Jia-He, Shi, Zhong-Ju, Li, Yan, Pan, Bin, Yuan, Shi-Yang, Shi, Lin-Lin, Hao, Yan, Cao, Fu-Jiang, Feng, Shi-Qing“…Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment results were also obtained. …”
Publicado 2019
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5760por Venugopal, Nitin, Yeh, Justin, Kodeboyina, Sai Karthik, Lee, Tae Jin, Sharma, Shruti, Patel, Nikhil, Sharma, Ashok“…The gene sets specific to each subtype were further analyzed to identify the enriched Gene Ontology terms, Kyoto Encyclopedia of Genes and Genomes pathways and biological functions. …”
Publicado 2019
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