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6281por Xue, Yaqi, Wang, Ping, Jiang, Fei, Yu, Jing, Ding, Hongmei, Zhang, Zengli, Pei, Hailong, Li, Bingyan“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis indicated that the DE genes were mainly enriched in TGF-β, MAPK, Ras, PI3K-Akt, and Hippo signaling pathways, as well as the vitamin D-related pathway. …”
Publicado 2021
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6282por Zhang, Tong-Mei, Yang, Kun, Liang, Su-Xia, Zhang, Pei-Pei, Wang, Hua-Lun, Tian, Yuan-Yuan, Xu, Zhao-Yuan, Liu, Hao, Yan, Ying-Bin“…DAVID was used to perform the Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analysis for the different expression genes (DEGs). …”
Publicado 2021
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6283por Yu, Yi-Yang, Dou, Guo-Xia, Sun, Xing-Xing, Chen, Lin, Zheng, Ying, Xiao, Hong-Mei, Wang, Yun-Peng, Li, Hong-Yang, Guo, Jian-Hua, Jiang, Chun-Hao“…The gene ontology (GO) classification and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment indicated that AR156 altered the transcription of numerous transcription factors and genes involved in the SA-related plant disease resistance, metabolism, and biosynthesis of benzoxazinoids and flavonoids. …”
Publicado 2021
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6284“…Differentially expressed genes (DEGs) were identified, followed by gene ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway and protein–protein interaction (PPI) analyses. …”
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6285“…Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed by R package. …”
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6286“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were applied to the genes and hub genes in the sJIA modules. …”
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6287“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis showed that the PI3K-Akt signaling pathway, Jak-STAT signaling pathway as well as the glutathione metabolism and steroid biosynthesis pathways may be the key pathways for the salinity adaptive regulation mechanism of the yellow drum. …”
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6288“…To better understand patterns of TP53 alternative isoforms expression in cancer and normal samples we performed exon-exon junction reads based analysis of TP53 isoforms using RNA-seq data from The Cancer Genome Atlas (TCGA), Cancer Cell Line Encyclopedia (CCLE), and Genotype-Tissue Expression (GTEx) project. …”
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6289“…Differentially expressed miRNAs and mRNAs in LSCC are screened using the PERL programming language, and it was analysed by Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG). The miRNA-mRNA regulatory network of LSCC is constructed using Cytoscape software. …”
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6290por Nie, Xin, Gao, Lingling, Zheng, Mingjun, Wang, Caixia, Wang, Shuang, Li, Xiao, Qi, Yue, Zhu, Liancheng, Liu, Juanjuan, Lin, Bei“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses showed that TMEFF1 and its related genes are involved in the cell cycle, regulation of mitosis, epigenetics, neural development, cell biological signal transduction and some key signal pathways. …”
Publicado 2021
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6291por Kodama, Yuta, Tanaka, Ichidai, Sato, Tatsuhiro, Hori, Kazumi, Gen, Soei, Morise, Masahiro, Matsubara, Daisuke, Sato, Mitsuo, Sekido, Yoshitaka, Hashimoto, Naozumi“…We conducted bioinformatics analysis using Cancer Cell Line Encyclopedia (CCLE) datasets to identify new molecular markers in MM. …”
Publicado 2021
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6292por Sun, Jiahong, Zhao, Min, Yang, Liu, Liu, Xue, Pacifico, Lucia, Chiesa, Claudio, Xi, Bo“…Logistic regression analysis was used to select significant metabolites associated with hypertension after adjustment for body mass index, waist circumference, and lipid profile. Kyoto Encyclopedia of Genes and Genomes (KEGG) and MetaboAnalyst were utilized to search for the potential pathways of metabolites. …”
Publicado 2021
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6293por Yang, Shasha, Fu, Qinwei, Deng, Hua, Liu, Zhiqing, Zhong, Juan, Zhu, Xiaoyu, Wang, Qian, Sun, Chuanhui, Wu, Jing“…Cytoscape software and BisoGenet Database were employed to perform the Visualization and Integrated Discovery (Cluster Profiler R package, version: 3.8.1). Kyoto Encyclopedia of Genes and Genomes and genome pathway analyses. …”
Publicado 2021
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6294por Shu, Huang-ying, Zhou, He, Mu, Hai-ling, Wu, Shu-hua, Jiang, Yi-li, Yang, Zhuang, Hao, Yuan-yuan, Zhu, Jie, Bao, Wen-long, Cheng, Shan-han, Zhu, Guo-peng, Wang, Zhi-wei“…Our phenotypic data indicated that the hybrid has dominance in leaf area, plant scope, plant height, and fruit-related traits. Kyoto Encyclopedia of Genes and Genomes analysis showed that nine members of the plant hormone signal transduction pathway were upregulated in the seedling and flowering stages of the hybrid, which was supported by weighted gene coexpression network analysis and that BC332_23046 (auxin response factor 8), BC332_18317 (auxin-responsive protein IAA20), BC332_13398 (ethylene-responsive transcription factor), and BC332_27606 (ethylene-responsive transcription factor WIN1) were candidate hub genes, suggesting the important potential role of the plant hormone signal transduction in pepper heterosis. …”
Publicado 2021
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6295por Wu, Xian rui, Chen, Zheng, Liu, Yang, Chen, Zi zi, Tang, Fengjie, Chen, Zhi zhao, Li, Jing jing, Liao, Jun lin, Cao, Ke, Chen, Xiang, Zhou, Jianda“…The gene set variation analysis (GSVA) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) clarified the involved functional pathways. …”
Publicado 2021
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6296por Nie, Xiang, Li, Huihui, Wang, Jin, Cai, Yuanyuan, Fan, Jiahui, Dai, Beibei, Chen, Chen, Wang, Dao Wen“…Finally, the patterns were analyzed by Pearson/Spearman rank correlation, Kyoto Encyclopedia of Genes and Genomes, and Cytoscape 3.7. …”
Publicado 2021
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6297por Li, Qingfei, Guo, Weili, Chen, Bihua, Pan, Feifei, Yang, Helian, Zhou, Junguo, Wang, Guangyin, Li, Xinzheng“…Gene ontology (GO) and Kyoto encyclopedia of genes and genomes (KEGG) analysis indicated that these genes were mainly enriched in plant hormone signal transduction and 1-aminocyclopropane-1-carboxylate oxidase (ACO). …”
Publicado 2021
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6298por Chen, Jianyong, Gao, Dekun, Chen, Junmin, Hou, Shule, He, Baihui, Li, Yue, Li, Shuna, Zhang, Fan, Sun, Xiayu, Mammano, Fabio, Sun, Lianhua, Yang, Jun, Zheng, Guiliang“…Gene ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis were used to examine genes enriched biological processes in these clusters. …”
Publicado 2021
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6299“…The expression levels of LINC00963, cell viability, the protein expression levels of proliferating cell nuclear antigen (PCNA) and Ki67, and the migratory capacity of HRECs were determined using reverse transcription-quantitative PCR (RT-qPCR), Cell Counting Kit-8 assay, western blot analysis, and wound healing and Transwell assays, respectively. Furthermore, the Encyclopedia of RNA Interactomes database was used to predict the binding targets of LINC00963, and luciferase reporter assay was used to verify the direct binding of microRNA (miR)-27b to LINC00963. …”
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6300por Chen, Fei, Fan, Yumei, Hou, Jiajie, Liu, Bing, Zhang, Bo, Shang, Yanan, Chang, Yanzhong, Cao, Pengxiu, Tan, Ke“…Moreover, Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) and gene set enrichment analysis (GSEA) were used to explore the molecular mechanism of TfR1. …”
Publicado 2021
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