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7121“…First, CARD11 expression in gastric cancer tissues and the association of CARD11 with overall survival were analyzed by the encyclopedia of RNA interactomes database. CARD11 expression in gastric cancer cells was detected by western blotting and reverse transcription-quantitative PCR analyses. …”
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7122por Wang, Bai-Hui, Du, Li-Feng, Zhang, Ming-Zhu, Xia, Luo-Yuan, Li, Cheng, Lin, Zhe-Tao, Wang, Ning, Gao, Wan-Ying, Ye, Run-Ze, Liu, Jin-Yue, Han, Xiao-Yu, Shi, Wen-Qiang, Shi, Xiao-Yu, Jiang, Jia-Fu, Jia, Na, Cui, Xiao-Ming, Zhao, Lin, Cao, Wu-Chun“…Cheeloo had lower counts than the other four Theileria species in most categories at level 3 of Gene Ontology annotation. Kyoto Encyclopedia of Genes and Genomes annotation revealed a loss of the c-Myb in T. luwenshuni str. …”
Publicado 2023
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7123Taxonomic and functional profiling of fecal metagenomes for the early detection of colorectal cancerpor Wu, Xudong, Tang, Zhimin, Zhao, Rongsong, Wang, Yusi, Wang, Xianshu, Liu, Side, Zou, Hongzhi“…High-quality reads were also aligned to IGC datasets to obtain functional profiles defined by Kyoto Encyclopedia of Genes and Genomes (KEGG). A least absolute shrinkage and selection operator (LASSO) classifier was constructed to quantify risk scores of probability of disease and to discriminate CRC from normal for discovery, validation, Fudan, GloriousMed, and HongKong cohorts. …”
Publicado 2023
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7124por Yang, Yang, Xiao, Bing, Feng, Xin, Chen, Yue, Wang, Qunhui, Fang, Jing, Zhou, Ping, Wei, Xiang, Cheng, Lin“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were performed by the clusterProfiler program package. …”
Publicado 2023
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7125por Guo, Juanjuan, Zhang, Ruiyu, Cheng, Siqi, Fu, Ziqian, Jia, Peng, Luan, Haoan, Zhang, Xuemei, Qi, Guohui, Guo, Suping“…Transcriptomics results revealed significant alterations in 42 HSP family genes, two SOD-related differentially expressed genes (DEGs), 25 POD-related DEGs, three CAT-related DEGs, and 38 photosynthesis-related DEGs under HTS. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis showed that these DEGs were mainly enriched in photosynthesis-antenna proteins, pentose and glucuronide interconversion, phenylpropane biosynthesis, and indole alkaloid biosynthesis. …”
Publicado 2023
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7126por Li, Wang-Qing, Zheng, Wen-Jie, Peng, Yan, Shao, Ye, Liu, Ci-Tao, Li, Jin, Hu, Yuan-Yi, Zhao, Bing-Ran, Mao, Bi-Gang“…Gene ontology (GO) analysis of the differentially expressed genes (DEGs) of ospms1 mutant seedlings treated with 0 mM and 150 mM NaCl showed significant enrichment in biological and cytological processes, such as peroxidase activity and ribosomes. The Kyoto Encyclopedia of Genes and Genomes (KEGG) metabolic pathway analysis showed that the DEGs specifically enriched ascorbate and aldarate metabolism, flavone and flavonol biosynthesis, and glutathione metabolism pathways. …”
Publicado 2023
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7127por Wu, Yan, Zha, Wenjun, Qiu, Dongfeng, Guo, Jianping, Liu, Gang, Li, Changyan, Wu, Bian, Li, Sanhe, Chen, Junxiao, Hu, Liang, Shi, Shaojie, Zhou, Lei, Zhang, Zaijun, Du, Bo, You, Aiqing“…To reveal the different responses of resistant and susceptible rice to BPH herbivory, the potential functions of these lncRNAs and circRNAs as competitive endogenous RNAs (ceRNAs) were predicted and investigated using Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses. Dual-luciferase reporter assays revealed that miR1846c and miR530 were targeted by the lncRNAs XLOC_042442 and XLOC_028297, respectively. …”
Publicado 2023
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7128por Ruidong, Sun, Shijin, He, Yuwei, Qi, Yimeng, Li, Xiaohang, Zhou, Ying, Liu, Xihang, Liu, Mingyang, Ding, Xiangling, Lv, Fenghai, Li“…Moreover, we identified 613 genes that were differentially expressed between PCU and PCM, which, according to Kyoto Encyclopedia of Genes and Genomes enrichment analysis, were enriched in amino acid metabolism and plant signal transduction pathways. …”
Publicado 2023
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7129por Zhou, Sitong, Yang, Yue, Cheng, Zheng, Wu, Mengyao, Han, Qi, Zhao, Wenzhong, Liu, Honggui“…Following bioinformatics analysis, Gene ontology (GO) enrichment, Kyoto encyclopedia of genes and genomes (KEGG) enrichment analysis, and candidate gene screening and pathway were performed for differentially expressed genes. …”
Publicado 2023
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7130“…The collected data were then processed to obtain common target genes and further analyzed through the String website to construct a protein–protein interaction (PPI) network, followed by gene ontology (GO) functional annotation and Kyoto Gene and Genome Encyclopedia (KEGG) pathway analysis. We further interpreted the molecular mechanism of salidroside for the treatment of endometrial cancer by constructing a “drug component–target gene–disease” network. …”
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7131por Sun, Shi, Wang, Yifang, Li, Jinhu, Wu, Ailing, Xie, Yan, Wang, Zhao, Zhao, Xinjie, Wang, Dandan, Wu, Xiaolong, Liu, Xinguang“…Next, target prediction, protein–protein interaction, compound-target network construction, gene ontology (GO), and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses were conducted for JGTXP. …”
Publicado 2023
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7132por Chen, Yan, Du, Tingting, Zhang, Jie, Chen, Shoukun, Fu, Junjie, Li, Huihui, Yang, Qin“…The first is the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway ko04141: protein processing in endoplasmic reticulum, four small heat shock protein (sHSP) genes were enriched in this pathway, participating with the process of ER-associated degradation (ERAD). …”
Publicado 2023
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7133por Wang, Qing, Weng, Heng, Xu, Yue, Ye, Hui, Liang, Yongqi, Wang, Lulu, Zhang, Yutong, Gao, Yujie, Wang, Jiayi, Xu, Yuchen, Sun, Zhiling, Xu, Guihua“…At the same time, RNA-seq and enrichment analysis of gene ontology and Kyoto Encyclopedia of Genes and Genomes were performed on the left tibias, followed by Elisa and RT-qPCR verification. …”
Publicado 2023
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7134“…Find genes highly related to the expression of AIM1L, conduct GO and Kyoto encyclopedia of genes and genomes (KEGG) enrichment analysis, and conduct GSEA analysis on the gene set. …”
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7135“…Analysis using the Kyoto Encyclopedia of Genes and Genomes demonstrated that the DEGs were primarily involved in the oxidative phosphorylation pathway. …”
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7136por Zhang, Danying, Li, Yifan, Jiang, Weiwei, Li, Wenfang, Yuan, Xiaowei, Lin, Zhaofen“…The relevant targets of luteolin and ALI were first obtained, and the key target genes were analyzed using a protein-protein interaction network, Gene Ontology, and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses. …”
Publicado 2023
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7137por Song, Baifen, Huang, Yanmei, Ma, Jinzhu, Yu, Liquan, Yu, Yongzhong, Peng, Chen, Wu, Wenxue“…The network analysis, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis were performed for functional annotation and exploration of ncRNA ceRNAs in BoHV-1 infection. …”
Publicado 2023
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7138por Wang, Yanzhe, Liu, Yuyuan, Chen, Sijia, Li, Fengqin, Wu, Yue, Xie, Xinmiao, Zhang, Nan, Zeng, Chuchu, Bai, Linnan, Dai, Mengshi, Zhang, Ling, Wang, Xiaoxia“…Potential candidate genes were identified and analyzed using Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG). The component-target networks were modelled and visualized with Cytoscape. …”
Publicado 2023
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7139por Zhou, Chengsheng, Gan, Xiaoshuang, Sun, Shandong, Wang, Lei, Zhang, Yong, Zhang, Jicheng“…Moreover, ERlncSys was explored through Gene Set Variation Analysis, Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses. Furthermore, the TIMER platform, ESTIMATE algorithm, single sample Gene Set Enrichment Analysis and immune checkpoint analysis were utilised to explore the predictive power of ERlncSys for the tumour immune microenvironment (TIME). …”
Publicado 2023
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7140“…Functional analysis was performed using Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and Ingenuity Pathway Analysis (IPA) annotations. …”
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