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9641por Zhao, Lin, Ding, Li Dong, Xia, Zi Hao, Sheng, Peng, Shen, Meng Meng, Cai, Zhong Ming, Yan, Bing Chun“…The key target genes were MAPK3, MAPK1, HSP90AA1, STAT3, PIK3R1, PIK3CA and AKT1. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis revealed significant enrichment of the PI3K/AKT and MAPK/ERK signaling pathways. …”
Publicado 2022
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9642“…The Database for Annotation, Visualization, and Integrated Discovery (DAVID) resources were used to analyze selected module genes, as well as Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway and Gene Ontology (GO) enrichment of PPI networks. …”
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9643por Liu, Taisheng, Hu, Xiaoshan, Lin, Chunxuan, Shi, Xiaoshun, He, Yujing, Zhang, Jian, Cai, Kaican“…Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were performed to investigate the biological functions of differentially expressed genes (DEGs) among different m5C RNA modification patterns. …”
Publicado 2022
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9644“…The biological process, cellular component, molecular function and pathways of different expression mRNAs targeted by lncRNA were explored using Gene Ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways analysis. …”
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9645“…METHODS: We screened the DEGs in GSE50760 and GSE104178 and performed functional Gene Ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis. …”
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9646por Huang, Xinyang, Zhao, Liangchao, Jin, Yixun, Wang, Zhuoxin, Li, Tong, Xu, Hui, Wang, Qi, Wang, Lifu“…Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis were executed by the R package ‘clusterProfiler’. …”
Publicado 2022
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9647“…A screen for APOA1 downstream proteins affecting platinum-based chemoresistance using Tandem Mass Tag revealed 64 differentially expressed proteins in SiHa cells, which were subjected to Gene Ontology (annotation, Kyoto Encyclopedia of Genes and Genomes enrichment, subcellular localization, structural domain annotation and enrichment, clustering, and interaction network analyses. …”
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9648“…Functional enrichment analysis of LOXs co-expressed genes was performed using Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG). TIMER and TISIDB were applied to analyze the relationship between LOXs expression and immune infiltration. …”
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9649por Lin, Zhiwei, Xu, Yifan, Guan, Lili, Qin, Lijie, Ding, Jiabin, Zhang, Qingling, Zhou, Luqian“…Next, the mRNA-miRNA network was constructed, and Gene Ontology (GO) annotation and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis for target genes were performed. …”
Publicado 2022
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9650por Dai, Yun, Zhang, Lei, Sun, Xiao, Li, Fei, Zhang, Shifan, Zhang, Hui, Li, Guoliang, Fang, Zhiyuan, Sun, Rifei, Hou, Xilin, Zhang, Shujiang“…To study the relationship between anthocyanin accumulation of Chinese cabbage and resistance under low-temperature conditions, RNA sequencing (RNA-seq) was performed on Chinese cabbage ‘Xiao Baojian’ grown at a low temperature for four time periods and at a control temperature for five time periods. In Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, 7954 differentially expressed genes (DEGs) were enriched, of which 587 DEGs belonged to "biosynthesis of other secondary metabolites." …”
Publicado 2022
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9651“…Weighted gene co-expression network analysis (WGCNA) and differential expression analysis were performed to screen out differentially expressed hypoxia-related genes (DE-HRGs) in LUSC microenvironment, and the underlying regulatory mechanism of DE-HRGs in LUSC was explored through Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. …”
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9652“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway were performed to enrich GO terms and signaling pathways using Metascape database. …”
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9653“…The transcriptomes of >1,000 cancer cell lines from the Cancer Cell Line Encyclopedia database were analyzed and 70 non-ESCC cell lines exhibiting similar transcriptome profiles to those of ESCC cells were identified. …”
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9654“…To investigate the biological function of cross-talk genes, the gene ontology (GO) functional enrichment analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis were applied. …”
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9655por Shi, Xi-Jin, Liu, Hui-Min, Li, Li, Zhang, Yan, Cong, Xin, Liu, Li-Mei, Wu, Li-ling, Xiang, Ruo-Lan“…Gene Ontology analysis of target genes of CNC network revealed that “calcium ion binding” was a highly enriched molecular function. Kyoto Encyclopedia of Genes and Genomes pathway analysis of target genes of ceRNA network revealed that the “mammalian target of rapamycin signaling pathway” was significantly enriched. …”
Publicado 2022
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9656por Liu, Fuqiang, Wei, Tao, Liu, Lin, Hou, Fangxia, Xu, Cuixiang, Guo, Hua, Zhang, Wei, Ma, Meijuan, Zhang, Yulian, Yu, Qi, Wang, Junkui“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses of NRDEGs were also performed. …”
Publicado 2022
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9657por Han, Qianguang, Zhang, Xiang, Ren, Xiaohan, Hang, Zhou, Yin, Yu, Wang, Zijie, Chen, Hao, Sun, Li, Tao, Jun, Han, Zhijian, Tan, Ruoyun, Gu, Min, Ju, Xiaobing“…Then a predictive model of BPAR was established based on logistic regression of which key transcripts involved in the predictive model were further explored using functional enrichment analyses including Gene Ontology analysis (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, and Gene Set Enrichment Analysis (GSEA). …”
Publicado 2022
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9658por Xia, Yiming, Huang, Xiaoling, Mo, Lidong, Wang, Chen, Fan, Weijia, Huang, Huiling“…RESULTS: There were total of 8275 proteins found, but only 35 differentially expressed proteins were identified (27 up-regulated and 8 down-regulated), and gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were performed to predict the biological pathways and functional classification of the proteins. …”
Publicado 2022
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9659por Ai, Hu“…Using this method, genes are filtered according to their importance following random forest training and GSEA is used to select genes by core enrichment of Kyoto Encyclopedia of Genes and Genomes pathways that are strongly related to breast cancer. …”
Publicado 2022
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9660“…Proteomic analysis identified 311 differentially expressed proteins (DEPs) between the two groups, and a Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis suggested that the DEPs were mainly enriched in signaling pathways such as metabolic pathways, protein processing in the endoplasmic reticulum, and complement and coagulation cascades. …”
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