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9721“…The Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses performed for the genes contained in the turquoise module indicated the potential roles of the selected genes in the regulation of LC development. …”
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9722por De Silva, Kushan, Demmer, Ryan T., Jönsson, Daniel, Mousa, Aya, Forbes, Andrew, Enticott, Joanne“…Downstream analyses included gene ontologies, Kyoto Encyclopedia of Genes and Genomes pathways, metabolomics, COVID-19-related gene sets, and Genotype-Tissue Expression profiles. …”
Publicado 2022
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9723por Yang, Rui-Cheng, Huang, Kun, Zhang, Hui-Peng, Li, Liang, Tan, Chen, Chen, Huan-Chun, Jin, Mei-Lin, Wang, Xiang-Ru“…Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses were performed to identify the functions of differentially expressed genes and related pathways. …”
Publicado 2022
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9724“…Further, DEGs (n = 8) were enriched in the Kyoto Encyclopedia of Genes and Genomes pathway “flavonoid biosynthesis.” …”
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9725por Luo, Yongxin, Liu, Shiying, Li, Huibiao, Hou, Jiangtao, Lin, Wenjia, Xu, Zewen, Lu, Tianyu, Li, Yanwu, Peng, Bin, Zhang, Shijing, Han, Xue, Kuang, Zuoliang, Wen, Yi, Cai, Jiazhong, Liu, Fengbin, Chen, Xin-Lin“…Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were performed to understand the roles of differential immune cell subsets. …”
Publicado 2022
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9726“…The DEmRNAs were further analyzed by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis. …”
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9727“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis indicated that extracellular matrix, extracellular region, extracellular region part, ECM-receptor interaction, collagen extracellular matrix, and collagen trimer were significantly enriched (P < 0.05). …”
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9728por Yan, Lijiao, Yang, Yuze, Ma, Xiaojun, Wei, Lianhua, Wan, Xuerui, Zhang, Zhao, Ding, Jucai, Peng, Jie, Liu, Guo, Gou, Huitian, Wang, Chuan, Zhang, Xiaoli“…According to GO analysis, these differentially expressed genes were involved in immune response, inflammation, apoptosis, and other processes. The Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis indicated the following pathways were linked to adhesion, invasion inflammation and apoptosis, including AMPK, FOXO, HIF-1, IL-17, JAK-STAT, MAPK, mTOR, NF-κB, p53, PI3K-Akt, TNF, Toll-like receptor, Rap1, RAS, prion disease, the bacterial invasion of epithelial cells pathway. …”
Publicado 2022
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9729“…The differentially expressed genes (DEGs) were identified using the Limma package, and Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were performed. …”
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9730Biomarkers of Metabolomics in Inflammatory Bowel Disease and Damp-Heat Syndrome: A Preliminary Studypor Wu, Xingxing, Liu, Kexin, Wu, Qi, Wang, Mao, Chen, Xuelian, Li, Yuge, Qian, Lin, Li, Changyin, Dai, Guoliang, Zhang, Qide, Mu, Genglin, Wu, Jing, Shan, Zhaowei“…With AUC ≥ 0.80, 7 differential plasma metabolites, mainly glycerophospholipids, were identified in IBD-DH. Kyoto Encyclopedia of Genes and Genomes analysis indicated that metabolic pathways, such as citrate cycle and amino acids metabolism, were mainly responsible for the distinction between IBD and healthy controls, whereas glycerophospholipid metabolism perturbation was not only a manifestation of IBD but also an important pathway to distinguish two subtypes defined by traditional medicine, IBD-DH and IBD-SD. …”
Publicado 2022
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9731por Mai, Ziling, Li, Huanqiang, Chen, Guanzhong, Chen, Enzhao, Liu, Liwei, Lun, Zhubin, Lai, Wenguang, Zhou, Chunyun, Yu, Sijia, Liu, Jin, Chen, Shiqun, Chen, Jiyan, Liu, Yong“…Gene Ontology (GO) biological functions and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways were performed to investigate using the Bioconductor tool for analysis. …”
Publicado 2021
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9732por Vu, Thi Hao, Hong, Yeojin, Truong, Anh Duc, Lee, Sooyeon, Heo, Jubi, Lillehoj, Hyun S., Hong, Yeong Ho“…RESULTS: A gene set overlapping test between the analyzed differentially expressed genes (DEGs) and functionally categorized genes was performed, including biological processes of the gene ontology (GO) and Kyoto encyclopedia of genes and genomes (KEGG) pathways. A total of 1,794 DEGs were observed between control and H5N1-infected resistant Ri chickens, 432 DEGs between control and infected susceptible Ri chickens, and 1,202 DEGs between infected susceptible and infected resistant Ri chickens. …”
Publicado 2022
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9733“…The Gene Ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genome (KEGG) pathway enrichment analysis were performed to establish the protein-protein interaction (PPI) network of DEGs and identified the hub genes. …”
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9734“…Abbreviations: PH, pulmonary hypertension; PAH, pulmonary arterial hypertension; WGCNA, weighted gene co-expression network analysis; PASMCs, pulmonary artery smooth muscle cells; VEGF, vascular endothelial growth factor; HIF-1α, hypoxia-inducible factor-1α; SMCs, smooth muscle cells; DEGs, differentially expressed genes; GEO, Gene Expression Omnibus; GO, Gene Ontology; KEGG, Kyoto Encyclopedia of Genes and Genomes; FBS, fetal bovine serum; OD, optical density; BCA, bicinchoninic acid; PVDF, polyvinylidene fluoride; PBS, phosphate-buffered saline; BP, biological process; MF, molecular function; CC, cell component.…”
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9735“…Furthermore, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment involved in the targets were performed by the DAVID database and ClueGO plugin in Cytoscape. …”
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9736por Zhong, Ming, Wang, Xiaohua, Zhu, Enyi, Gong, Lian, Fei, Lingyan, Zhao, Liang, Wu, Keping, Tang, Chun, Zhang, Lizhen, Wang, Zhongli, Zheng, Zhihua“…Gene set variation analysis (GSVA), Gene Ontology (GO) analysis, and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis revealed that pyroptosis activation meant infiltration of more immune cells that is conducive to tumor progression. …”
Publicado 2022
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9737por Fang, Ke‐Ying, Liang, Gui‐Ning, Zhuang, Zhuo‐Qing, Fang, Yong‐Xin, Dong, Yu‐Qian, Liang, Chuang‐Jia, Chen, Xin‐Yan, Guo, Xu‐Guang“…The enrichment analysis was performed with R software, obtaining the Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG). Subsequently, the protein–protein interaction (PPI) networks of each group were established, and the hub genes were discovered using the cytoHubba plugin. …”
Publicado 2022
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9738“…Functional enrichment analysis, including Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway was conducted. …”
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9739por Jiang, Yiyao, Zhang, Xu, Wei, Ting, Qi, Xianjie, Abba, Isah Amir, Zhang, Nana, Chen, Yao, Wang, Ran, Shi, Chao“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed for the key genes in modules. …”
Publicado 2022
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9740por Zhang, Qian, Huang, Hui, Zhang, Meijun, Fang, Chuling, Wang, Na, Jing, Xiaoyan, Guo, Jian, Sun, Wei, Yang, Xiaoyu, Xu, Zuojun“…The identified genes were included for further pathway analysis using Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG). Additionally, we used the STRING database to construct a protein network of rare variants and Cytoscape to identify hub genes of signaling pathways. …”
Publicado 2022
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