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10361por Liu, Man, Si, Qiufang, Ouyang, Songyun, Zhou, Zhigang, Wang, Meng, Zhao, Chunling, Yang, Ting, Wang, Yulin, Zhang, Xue, Xie, Wenbo, Dai, Liping, Li, Jitian“…Gene Ontology (GO), and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis were tested by R software (ClusterProfiler package). …”
Publicado 2020
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10362por Guo, Xiang, Ji, Jinyu, Jose Kumar Sreena, Goutham Sanker, Hou, Xiaoqiang, Luo, Yanan, Fu, Xianyun, Mei, Zhigang, Feng, Zhitao“…Based on the overlapping genes, we used Cytoscape 3.7.2 software to construct a protein–protein interactions (PPI) network and applied Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis to determine the mechanisms of the treatment. …”
Publicado 2020
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10363“…Functional analysis of differentially expressed (DE) circRNAs were processed by Gene Ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis. …”
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10364por Zhao, Wenyuan, Wang, Jun, Luo, Qingxi, Peng, Wei, Li, Bin, Wang, Lei, Zhang, Chunfang, Duan, Chaojun“…The downstream DEmRNAs were then enriched in 405 Gene Ontology terms and 11 Kyoto Encyclopedia of Genes and Genomes pathways, which revealed their potential functions and mechanisms. …”
Publicado 2020
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10365por Zhou, Ziyan, Liu, Chang, Liu, Kang, Lv, Meixin, Li, Baibei, Lan, Zhenrui, Chen, Wei, Kang, Min“…We also used Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) for enrichment analyses adapted to investigate the dynamics and possible mechanisms of miR-205-5p in HNSCC. …”
Publicado 2020
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10366por Lei, Dan, Hong, Tao, Li, Longxue, Chen, Lai, Luo, Xiaoquan, Wu, Qinghua, Liu, Zhiyong“…Through the analysis of Gene Ontology and Kyoto Encyclopedia of Genes and Genomes, the cellular localization, functional annotation and biological pathways of differentially expressed proteins were ex-amined. …”
Publicado 2021
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10367por Wang, Jing-Jing, Wang, Han, Zhu, Bao-Long, Wang, Xiang, Qian, Yong-Hong, Xie, Lei, Wang, Wen-Jie, Zhu, Jie, Chen, Xing-Yu, Wang, Jing-Mei, Ding, Zhi-Liang“…In the present study, differentially expressed genes (DEGs) and differentially expressed IRGs (DEIRGs) were identified using the edgeR package. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis was used for functional enrichment analysis of DEIRGs. …”
Publicado 2021
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10368por Chu, Man, Wu, Ping, Hong, Ming, Zeng, Huasong, Wong, Chun Kwok, Feng, Yu, Cai, Zhe, Lu, William Weijia“…Gene Ontology and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis was adopted to predict the potential targets and signaling pathway of LZ-SMS in OA through the tool of DAVID Bioinformatics. …”
Publicado 2020
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10369por Hong, Zhipeng, Wang, Qinglan, Hong, Chengye, Liu, Meimei, Qiu, Pengqin, Lin, Rongrong, Lin, Xiaolan, Chen, Fangfang, Li, Qiuhuang, Liu, Lingling, Wang, Chuan, Chen, Debo“…In addition, 36 out of 39 BC patients showed significantly worse outcomes by Kaplan-Meier plotter (KM plotter), and an additional Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis revealed that seven genes (cyclin E2 (CCNE2), cyclin B1 (CCNB1), cyclin B2 (CCNB2), mitotic checkpoint serine/threonine kinase B (BUB1B), dual-specificity protein kinase (TTK), cell division cycle 20 (CDC20), and pituitary tumor transforming gene 1 (PTTG1)) were markedly enriched in the cell cycle pathway. …”
Publicado 2021
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10370por Zhou, Jing, Chen, Siqi, Shi, Wenjiao, David-Schwartz, Rakefet, Li, Sutao, Yang, Fulin, Lin, Zhanxi“…Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analyses revealed abiotic stress-responsive genes and pathways related to catalytic activity, methyltransferase activity, transferase activity, and superoxide metabolic process. …”
Publicado 2021
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10371por Han, Kun, Blair, Robert V., Iwanaga, Naoki, Liu, Fengming, Russell-Lodrigue, Kasi E., Qin, Zhongnan, Midkiff, Cecily C., Golden, Nadia A., Doyle-Meyers, Lara A., Kabir, Mohammad E., Chandler, Kristin E., Cutrera, Kellie L., Ren, Mi, Monjure, Christopher J., Lehmicke, Gabrielle, Fischer, Tracy, Beddingfield, Brandon, Wanek, Alanna G., Birnbaum, Angela, Maness, Nicholas J., Roy, Chad J., Datta, Prasun K., Rappaport, Jay, Kolls, Jay K., Qin, Xuebin“…Pathway analysis showed that several Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways were enriched in the data set, including cytokine–cytokine receptor interaction, the chemokine signaling pathway, the NOD-like receptor signaling pathway, the measles pathway, and the IL-17 signaling pathway. …”
Publicado 2021
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10372por Fei, Wenyong, Liu, Mingsheng, Zhang, Yao, Cao, Shichao, Wang, Xuanqi, Xie, Bin, Wang, Jingcheng“…Common differentially expressed genes (DEGs) were obtained for further analysis such as protein-protein interaction (PPI) network, Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and GSEA analysis. …”
Publicado 2021
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10373“…Further, the functional annotations are summarized into Kyoto Encyclopedia of Genes and Genomes (KEGG) modules as part of a graphical output (heatmap) that allows the user to quickly detect differences among (multiple) query genomes and cluster the genomes based on their metabolic similarity. …”
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10374por Cui, Qihao, Yang, Hua, Gu, Yuming, Zong, Chenyu, Chen, Xin, Lin, Yinghao, Sun, Hualin, Shen, Yuntian, Zhu, Jianwei“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) were used for cluster analysis of DEGs. …”
Publicado 2020
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10375“…Gene set annotation analyses were also conducted through the Hallmark gene set and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, indicating target genes of the six miRNAs were positively related to various molecular pathways of cancer, such as hallmark UV response, Wnt signaling pathway and mTOR signaling pathway. …”
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10376por Zhao, Xingwang, Zhang, Longlong, Wang, Juan, Zhang, Min, Song, Zhiqiang, Ni, Bing, You, Yi“…The gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichments of DEGs were performed by metascape etc. online analyses. …”
Publicado 2021
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10377“…Two datasets, the Genomics of Drug Sensitivity in Cancer (GDSC) and Cancer Cell Line Encyclopedia (CCLE) are used to indicate the efficiency of the proposed method across unseen patient cell-line. …”
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10378por Cao, Min, Yan, Xu, Su, Baofeng, Yang, Ning, Fu, Qiang, Xue, Ting, Song, Lin, Li, Qi, Li, Chao“…The differentially expressed RNAs were quantitatively validated using qRT-PCR. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis showed that most of the differentially expressed mRNA genes and the target genes of ncRNAs were related to immune signaling pathways, such as the NF-κB signal pathway, pathogen recognition receptors related to signaling pathways (Toll-like receptors and Nod-like receptors), and the chemokine signaling pathway. …”
Publicado 2021
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10379“…The target genes of the FFL were obtained from the miRTarBase database, and the Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) functional enrichment analyses were performed on the target genes. …”
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10380por Han, Caixia, He, Shujiao, Wang, Ruiqi, Gao, Xuefeng, Wang, Hong, Qiao, Jingqiao, Meng, Xiangyu, Li, Yonghui, Yu, Li“…METHODS: We compared the transcriptional expression, prognosis, differentially expressed genes, functional enrichment, and hub genes in AML patients on the basis of the data published in the following databases: UALCAN, GEPIA, Gene Expression Omnibus, the Human Protein Atlas, Cancer Cell Line Encyclopedia, LinkedOmics, Metascape, and String. Data from the Cancer Genome Atlas database was used to evaluate the correlations between ARHGAP9 expression and various clinicopathological parameters, as well as the significantly different genes associated with ARHGAP9 expression. …”
Publicado 2021
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