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10481por Zhao, Si-Jia, Jia, Hong, Xu, Xiu-Lian, Bu, Wen-Bo, Zhang, Qian, Chen, Xi, Ji, Juan, Sun, Jian-Fang“…Next, the key pathways were obtained by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. …”
Publicado 2021
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10482“…In accordance to GO enrichment analysis, protein families (PFAM) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways enrichment analysis also showed significant enrichment in nucleic acid terms. …”
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10483por Yang, Qian, Nong, Xiaoyi, Xu, Jize, Huang, Fan, Wang, Fang, Wu, Jiangsheng, Zhang, Chunyu, Liu, Chao“…The upregulated differentially expressed genes (DEGs) were enriched in the Kyoto Encyclopedia of Genes and Genomes (KEGG) lysine degradation pathway and phenylalanine metabolism, and the downregulated DEGs were enriched in cutin, suberine, and wax biosynthesis. …”
Publicado 2021
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10484por Zhang, Di, Sun, Jianxin, Chang, Shiquan, Li, Xing, Shi, Huimei, Jing, Bei, Zheng, Yachun, Lin, Yi, Qian, Guoqiang, Pan, Yuwei, Zhao, Guoping“…Subsequently, Kyoto Encyclopedia of Genes and Genomes analysis was performed by WebGestalt. …”
Publicado 2021
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10485“…Further, we used the online Search Tool for the Retrieval of Interacting Genes/Proteins website, Gene Ontology, and Kyoto Encyclopedia of Genes and Genomes to conduct enrichment analysis and identify the predictive signaling pathways. …”
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10486“…For targeted mRNA functional analysis, gene ontology (GO) analyses and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were subsequently conducted. qRT-PCR validation and luciferase reporter assays were performed. …”
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10487por Long, Jieyi, Long, Tingting, Li, Ying, Yuan, Peihong, Liu, Ke, Li, Jiaoyuan, Cheng, Liming“…METHODS: We mapped the chromatin accessible regions of lung tissues using data of assay for transposase-accessible chromatin using sequencing (ATAC-seq) in The Cancer Genome Atlas (TCGA) and prioritized potential regulatory variants within lung cancer GWAS loci by aligning with histone signatures using data of chromatin immunoprecipitation assays followed by sequencing (ChIP-seq) in the Encyclopedia of DNA Elements (ENCODE). A two-stage case–control study with 1,830 cases and 2,001 controls was conducted to explore the associations between candidate variants and NSCLC risk in Chinese population. …”
Publicado 2021
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10488por Rydzewski, Nicholas R., Peterson, Erik, Lang, Joshua M., Yu, Menggang, Laura Chang, S., Sjöström, Martin, Bakhtiar, Hamza, Song, Gefei, Helzer, Kyle T., Bootsma, Matthew L., Chen, William S., Shrestha, Raunak M., Zhang, Meng, Quigley, David A., Aggarwal, Rahul, Small, Eric J., Wahl, Daniel R., Feng, Felix Y., Zhao, Shuang G.“…Models were then validated on additional in-vitro data from the Cancer Cell Line Encyclopedia (CCLE), and on clinical samples from The Cancer Genome Atlas (TCGA) and Stand Up to Cancer/Prostate Cancer Foundation West Coast Prostate Cancer Dream Team (WCDT). …”
Publicado 2021
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10489por Yuan, Lingyun, Zheng, Yushan, Nie, Libing, Zhang, Liting, Wu, Ying, Zhu, Shidong, Hou, Jinfeng, Shan, Guo Lei, Liu, Tong Kun, Chen, Guohu, Tang, Xiaoyan, Wang, Chenggang“…The key genes associated with the physiological response of wucai to the treatments were analyzed. The Kyoto Encyclopedia of Genes and Genomes and Gene Ontology annotations indicated the importance of the photosynthesis and photosynthetic-antenna protein pathways. …”
Publicado 2021
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10490“…Gene Ontology (GO) analysis and the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway depicted the functions and potential pathway associated with Co-DE mRNAs. …”
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10491por Zhu, Chao, Zhu, Junru, Duan, Quyu, Jiang, Yue, Yin, Hao, He, Yonglong, Li, Fu, An, Xiao-Peng“…In addition, the Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis showed that the calcium signaling pathway, oxytocin signaling pathway and MAPK signaling pathway were enriched. …”
Publicado 2021
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10492por Duan, Liju, Jiang, Hongying, Liu, Jifeng, Liu, Yilin, Ma, Tengfei, Xie, Yike, Wang, Ling, Cheng, Juan, Zou, Jian, Wu, Jiang, Liu, Shixi, Gao, Mingzhong, Li, Weimin, Xie, Heping“…Then, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway was analyzed for the DE mRNAs which enabled to predict target genes of lncRNA and host genes of circRNA. …”
Publicado 2021
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10493“…CeRNA network prediction, gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were performed for the circRNAs with prognostic significance. …”
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10494por Liang, Leilei, Yu, Jing, Li, Jian, Li, Ning, Liu, Jing, Xiu, Lin, Zeng, Jia, Wang, Tiantian, Wu, Lingying“…CIBERSORT was used to identify immune scores of cells and the “WGCNA” package for the weighted correlation network analysis (WGCNA). KEGG (Kyoto Encyclopedia of Genes and Genomes) and GO (Gene Ontology) analyses of subtype groups were performed by GSEA. …”
Publicado 2021
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10495por Liu, Peixi, Shi, Yuan, Li, Sichen, Liu, Yingjun, Zhou, Yingjie, Song, Yaying, Zhu, Wei, An, Qingzhu“…Bioinformatics analysis of the differentially expressed proteins was performed using Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and protein–protein interaction (PPI) networks. …”
Publicado 2021
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10496por Wu, Kunjing, Duan, Xiaojing, Zhu, Zhonglong, Sang, Ziyang, Duan, Jie, Jia, Zhongkui, Ma, Luyi“…Differentially expressed genes were annotated using Gene Ontology and the Kyoto Encyclopedia of Genes and Genomes pathway analyses. The transcriptomic analysis focused on carbon metabolism and plant hormone signal transduction associated with cold acclimation. …”
Publicado 2021
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10497por Zhao, Xin, Guo, Xuhui, Jiao, Dechuang, Zhu, Jiujun, Xiao, Hui, Yang, Yue, Zhao, Shengnan, Zhang, Jingyang, Jiao, Feifei, Liu, Zhenzhen“…To obtain the final results, Gene Ontology (GO) enrichment analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis were used to annotate the function and pathway of the differentially expressed genes. …”
Publicado 2021
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10498por Huang, Yu-Xia, Li, Fei, Liu, Dong, Sun, Yuan-Yuan, Zhao, Qin-Hua, Jiang, Rong, Wang, Lan, Yuan, Ping, Liu, Jin-Ming, Wu, Yue, Zhang, Ji“…Gene Ontology and KEGG (Kyoto Encyclopedia of Genes and Genomes) enrichment analysis for mRNAs were performed using the R package clusterProfiler software. …”
Publicado 2021
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10499“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were performed on the genes associated with the differentially expressed eccDNAs. …”
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10500“…Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses were performed to investigate the biological functions of significantly dysregulated mRNAs. …”
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