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10721“…The enrichment analysis of SYCP2 including Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), Friends, and GSEA was performed. …”
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10722por Fan, Tao, Xue, Liang, Dong, Bingzheng, He, Houguang, Zhang, Wenda, Hao, Lin, Ma, Weiming, Zang, Guanghui, Han, Conghui, Dong, Yang“…Co-expressed genes were explored using Cancer Cell Line Encyclopedia database and the corresponding expression were assessed in vitro. …”
Publicado 2022
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10723por Liu, Zheliang, Shao, Jiahao, Lai, Songjia, Wang, Jie, Zhao, Kaisen, Tang, Tao, Wang, Meigui“…The screened differential metabolites were mostly related to intestinal barrier, intestinal inflammation, and autophagy after a KEGG (Kyoto Encyclopedia of Genes and Genomes) analysis. In this paper, we analyzed the metabolic pathways that were significantly different between different intestinal segments and illustrated the mechanism and potential connections of the screened differential metabolites in different intestinal segments in the form of charts. …”
Publicado 2022
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10724por Fu, Liu, Wang, Zhe, Jiang, Fengxiang, Wei, Guohua, Sun, Longe, Guo, Chuanyong, Wu, Jianye, Zhu, Jianhuan“…LinkedOmics was used to identify the co-expressed genes and Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathways. The Tumor-Immune System Interaction database was employed to analyze the correlation between EIF4G2 expression and tumor-infiltrating lymphocytes. …”
Publicado 2022
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10725“…Immune-related differentially expressed genes (irDEGs), gene ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway, protein-protein interaction, gene-gene interaction (GGI) network, pivotal gene identification, and immune-infiltration analyses were carried out, and finally, risk-prediction models were constructed. …”
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10726por Lin, Peng, Hu, Xiao-Li, Hu, Yuan-Yuan, Liu, Mai-Ying, Wang, Qian-Yu, Ding, Yan, Ye, Jia-Cai“…A protein-protein interaction (PPI) analysis, modular analysis, and Gene Ontology (GO)/Kyoto Encyclopedia of Genes and Genomes (KEGG) functional enrichment analysis were then conducted to identify the hub genes. …”
Publicado 2022
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10727por Li, Zhiyuan, Xia, Zhinan, Yu, Yipeng, Cai, Licheng, Jian, Wengang, Wang, Tengda, Xue, Wei, Wang, Xingyuan, Wang, Bowen, Zhang, Peng, Yao, Wenhao, Zhang, Cheng, Wang, Chunyang“…In combination with clinical features, risk scores were considered a predictive factor of OS in ccRCC. KEGG (Kyoto Encyclopedia of Genes and Genomes) and GO (Gene Ontology) analyses suggest increased immunity and enrichment of genes related to immunity in the HR group. …”
Publicado 2022
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10728por Xue, Hongkun, Wang, Yu, Xiang, Hongwei, Song, Qi, Zhang, Guowei, Wang, Jianguo, Ge, Shaoqin“…Moreover, gene function annotation (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis were performed to study the potential signaling pathways associated with HJJPD's effect on NAFLD. …”
Publicado 2022
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10729por Zhao, Kai, Li, Wenhu, Yang, Yongtao, Hu, Xinyue, Dai, Ying, Huang, Minhao, Luo, Ji, Zhang, Kui, Zhao, Ninghui“…Gene Ontology and Kyoto Encyclopedia of Genes and Gene enrichment analysis of differentially expressed genes were conducted. …”
Publicado 2022
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10730por Chen, Peng, Li, He-qin, Li, Xing-yue, Zhou, Xian-hong, Zhang, Xiu-xia, Zhang, An-sheng, Liu, Qi-zhi“…A Gene Ontology (GO) analysis indicated that the up-regulated DEGs were mainly assigned to defense-related GO terms, and most down-regulated DEGs were assigned to nutrient-related GO terms. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis revealed that the responsive DEGs were classified in a large number of important biological pathways, such as phenylalanine metabolism, starch and sucrose metabolism, phenylpropanoid biosynthesis, glutathione metabolism and plant-pathogen interaction. …”
Publicado 2022
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10731por Zhang, Mengxue, Liu, Jia, Zhang, Xiangzhuo, Zhang, Shumeng, Jiang, Yujie, Yu, Zixuan, Xie, Ting, Chen, Yuxia, Chen, Lingli, Li, Jie“…R language software and bioconductor plug-in were used for Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. …”
Publicado 2022
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10732por Yang, Cai-Zhi, Yang, Ting, Liu, Xue-Ting, He, Can-Feng, Guo, Wei, Liu, Shan, Yao, Xiao-Hui, Xiao, Xi, Zeng, Wei-Ran, Lin, Li-Zhu, Huang, Zhong-Yu“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were performed to predict the potential functions of lncRNAs. …”
Publicado 2022
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10733por Schagdarsurengin, Undraga, Breiding, Vanessa, Loose, Maria, Wagenlehner, Florian, Dansranjav, Temuujin“…Transcription factors with high binding affinities in IRAK1-DMR were significantly enriched for canonical pathways associated with viral infection and carcinogenic transformation in the Kyoto Encyclopedia of Gene and Genomes analysis. DU145 cells, exhibiting hypermethylated IRAK1-DMR and low IRAK1-expression, reacted with 4-fold increased IRAK1-expression upon combined treatment with 5-aza-2-deoxycytidine and trichostatin A, and were unresponsive to infection with the uropathogenic Escherichia coli strain UTI89. …”
Publicado 2022
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10734“…Gene ontology (GO) function and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed on the DEGs. …”
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10735“…The DEmRNA in the network was imported into the Gene and Protein Interaction Retrieval Database (STRING), gene-encoded protein–protein interactions (PPI) network maps were created, and the genes in the PPI network maps were submitted to GO functional annotation and pathway enrichment analysis using Kyoto Encyclopedia of Gene Genomes (KEGG) (KEGG). The link between hub gene and prognosis was studied using the clinical data collected by TCGA. …”
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10736por Xie, Yongpeng, Luo, Jiye, Hu, Wenxia, Ye, Chongchong, Ren, Panpan, Wang, Yanli, Li, Xiaomin“…Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis were performed using the mRNA DEGs. …”
Publicado 2022
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10737por Yang, Haoran, He, Yating, Liao, Jing, Li, Xin, Zhang, Junhong, Liebl, Wolfgang, Chen, Fusheng“…Transcriptomic results demonstrated that more genes were downregulated than upregulated at both mid and final stages. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrich analysis reflected that the upregulated genes mainly carried out tricarboxylic acid cycle and oxidative phosphorylation processes, probably implying a considerable role of acetic acid overoxidation in AR during fermentation. …”
Publicado 2022
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10738por Nazar, Mudasir, Abdalla, Ismail Mohamed, Chen, Zhi, Ullah, Numan, Liang, Yan, Chu, Shuangfeng, Xu, Tianle, Mao, Yongjiang, Yang, Zhangping, Lu, Xubin“…Pathway analysis revealed that 58 Gene Ontology (GO) terms and 18 Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways were enriched with adjusted p values, and these GO terms and the KEGG pathway analysis were associated with biological information, metabolism, hormonal growth, and development processes. …”
Publicado 2022
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10739por Xiao, Guohui, Zhang, Su, Zhang, Like, Liu, Shuyan, Li, Guobao, Ou, Min, Zeng, Xuan, Wang, Zhaoqin, Zhang, Guoliang, Lu, Shuihua“…H37Rv infection specifically induced 247 differentially changed metabolites compared to H37Ra or BCG infection. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis revealed H37Rv specifically induces tryptophan metabolism. …”
Publicado 2022
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10740“…The software RStudio 4.1.3 was used to analyze the enrichment of these targets using Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. Protein-protein interaction (PPI) network analysis of the common targets was performed using the Search Tool for the Retrieval of Interacting Genes/Genomes (STRING) database. …”
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