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10901“…The Metascape database was adopt for Kyoto encyclopedia of genes and genomes (KEGG) enrichment analysis. …”
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10902por Huang, Rong, Wang, Wenjia, Chen, Ziyi, Chai, Jing, Qi, Qin, Zheng, Handan, Chen, Bingli, Wu, Huangan, Liu, Huirong“…Differentially expressed genes (DEGs) were screened and then subjected to Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) functional correlation analysis, as well as protein-protein interaction (PPI) network analysis. …”
Publicado 2023
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10903“…The down-regulated genes of this enzyme were found to be enriched in the cell cycle, DNA replication, mitotic processes, and the oxidative phosphorylation pathway, as previously revealed from gene ontology (GO), Kyoto encyclopedia of genes and genomes (KEGG), and gene set enrichment analysis (GSEA), suggesting vital roles of the Kdm4d enzyme in the cell cycle and in antioxidant regulation. …”
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10904por Dehghanian Reyhan, Vahid, Ghafouri, Farzad, Sadeghi, Mostafa, Miraei-Ashtiani, Seyed Reza, Kastelic, John P., Barkema, Herman W., Shirali, Masoud“…In total, 34 circRNAs, 57 lncRNAs, 15 miRNAs, and 374 mRNAs were identified by integrating gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. …”
Publicado 2023
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10905por Wu, Hongxin, Xu, Yating, Zafar, Junaid, Mandal, Surajit De, Lin, Liangjie, Lu, Yongyue, Jin, Fengliang, Pang, Rui, Xu, Xiaoxia“…Upon analyzing the statistically significant WGCNA model and conducting Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis on the modules, we identified key immune pathways, including the Toll and Imd signaling pathways, lysosomes, autophagy, and phagosomes, which may collectively contribute to S. invicta defense against M. anisopliae infection. …”
Publicado 2023
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10906“…These networks were further analyzed using gene ontology (GO) and Kyoto encyclopedia of genes and genomes (KEGG). The interaction between molecules was verified through molecular docking using AutoDock Tools software. …”
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10907por Hu, Ke, Wang, Chen, Xu, Yifan, Li, Fan, Han, Xuefeng, Song, Chuanwang, Liang, Meng“…To determine the potential signaling pathway of lncRNA Gm2044 regulating estradiol synthesis, transcriptome sequencing was performed for ovaries of adult lncRNA Gm2044 knockout mice, which identified 565 significant up-regulated genes and 303 significant down-regulated genes, which were then analyzed with Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) and validated by molecular experiments. …”
Publicado 2023
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10908por Chen, Chen, Ren, Huibo, Li, Huali, Deng, Yuan, Cui, Qingming, Zhu, Ji, Zhang, Siyang, Yu, Jine, Wang, Huiming, Yu, Xiaodan, Yang, Shiliu, Hu, Xionggui, Peng, Yinglin“…Gene ontology (GO) and kyoto encyclopedia of genes and genomes (KEGG) enrichment were subsequently implemented, and hub genes were described in each module. …”
Publicado 2023
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10909por Zhou, Youtao, Lin, Zikai, Xie, Shuojia, Gao, Yuan, Zhou, Haobin, Chen, Fengzhen, Fu, Yuewu, Yang, Cuiyan, Ke, Chuanfeng“…Further, the interrelation between fatty acid-related modules in COPD and CRC was demonstrated via weighted gene co-expression network analysis and Kyoto Encyclopedia of Genes and Genomes enrichment results using RNA expression data. …”
Publicado 2023
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10910por Zhang, Zhi-Guo, Shi, Zhen-Duo, Dong, Jia-Jun, Chen, Yu-Ang, Cao, Ming-Yang, Li, Yun-Tian, Ma, Wei-Ming, Hao, Lin, Pang, Kun, Zhou, Jia-He, Zhang, Wen-Da, Dong, Yang, Han, Cong-Hui“…Moreover, co-expressed genes and potential biological functions related to specific genes were explored based on the Cancer Cell Line Encyclopedia (CCLE) database. RESULTS: A total of 560 differentially expressed genes (DEGs) were identified when comparing the urine sediment samples from HGBC patients with the benign ones. …”
Publicado 2023
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10911por Yang, Guangrun, Zhou, Jiafu, Guo, Zhong, Fan, Lixia, Chen, Bowen, Zhang, Dapeng, Wen, Haitao“…Upregulation of CEP135 levels in nasopharyngeal cancer cell lines increased cell activity, accelerated cell migration, and inhibited apoptosis. The Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis revealed that CEP135 exerted the above effects on cells via the NF-κB pathway, and co-culture with NF-κB pathway blockers reversed cell biological behavior to the level of the control group. …”
Publicado 2023
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10912“…In addition, DEGs analysis was performed by Gene Ontology (GO) functional analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis. …”
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10913por Liu, Ming-Jian, Gao, Jie, Guo, Hua-Yang, Zhu, Ke-Cheng, Liu, Bao-Suo, Zhang, Nan, Sun, Jin-Hui, Zhang, Dian-Chang“…Transcriptomic analysis identified 5492, 6937, and 4246 differentially expressed genes (DEGs) in the 21 vs. 24 °C, 27 vs. 24 °C, and 30 vs. 24 °C comparisons, respectively, most of which were involved in cell processes, single organism, metabolism, catalytic activity, and cell part, based on gene ontology (GO) functional annotations. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis showed that the DEGs were mainly enriched in pathways related to metabolism of matter and energy, protein digestion and absorption, and glucose and lipid metabolism. …”
Publicado 2023
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10914por Wei, Jing, Guo, Fangzheng, Song, Yamin, Xu, Kun, Lin, Feiyang, Li, Kangsheng, Li, Baiqing, Qian, Zhongqing, Wang, Xiaojing, Wang, Hongtao, Xu, Tao“…METHODS: In this study, we performed high-throughput RNA sequencing of peripheral blood mononuclear cells (PBMC) from Mtb-Ag-stimulated and control samples to identify differentially expressed genes and used them for gene ontology (GO) and a Kyoto Encyclopedia of Genomes (KEGG) enrichment analysis. Meanwhile, we used PPI protein interaction network and Cytoscape analysis to identify key genes and qRT-PCR to verify differential gene expression. …”
Publicado 2023
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10915“…Transcriptome sequencing was used to assess genome-wide gene expression. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis was used to determine the signaling pathways affected by APS. …”
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10916por Huang, Huanhuan, Luo, Jie, Qi, Yanjie, Wu, Yuanzhen, Qi, Junhui, Yan, Xiuping, Xu, Gaoyang, He, Fan, Zheng, Yi“…Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses of the target mRNAs in the ceRNA network were performed to predict the potential functions of their host genes. …”
Publicado 2023
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10917por Jiang, Qianming, Palombo, Valentino, Sherlock, Danielle N, Vailati-Riboni, Mario, D’Andrea, Mariasilvia, Yoon, Ilkyu, Loor, Juan J“…Statistical analysis was performed in R and bioinformatics using the KEGG (Kyoto Encyclopedia of Genes and Genomes) and GO databases. …”
Publicado 2023
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10918“…Hub genes were identified from the resulting PPI network and further investigated using Gene Ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis. …”
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10919por Wang, Yaomei, Liu, Yuchao, Cao, Tingting, Shi, Chunyuan, Ren, Zili, Zhao, Yanling“…In terms of molecular functions, the most abundant functions of the DEPs were catalytic activity, binding activity, transport activity, and enzyme regulation activity. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis revealed that the DEPs were mainly involved in the cytokine and cytokine receptor interaction, notch signaling pathway, lysine biosynthesis, renal function-related protein and proteasome pathway. …”
Publicado 2023
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10920por Zhu, Mingyang, He, Qingmin, Wang, Yanan, Duan, Liying, Rong, Kang, Wu, Yingying, Ding, Ye, Mi, Yang, Ge, Xiaoyang, Yang, Xiaocui, Yu, Yong“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses of intersecting genes were conducted by the website of Bioinformatics. …”
Publicado 2023
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