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11061“…Gene Ontology (GO) enrichment analyses, Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis and gene set enrichment analysis (GSEA) of the DEGs were performed. …”
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11062por Wang, Qingqing, Yu, Xiaoyan, Zheng, Zhewen, Chen, Fengxia, Yang, Ningning, Zhou, Yunfeng“…R packages were used for Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) enrichment analyses of the DEGs. …”
Publicado 2021
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11063“…The relationship between PKM2 gene and clinicopathological characteristics was analyzed by using LinkedOmics, and the Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment pathway analysis was performed by using Metascape. …”
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11064“…In addition, enrichment analysis including Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) were performed on mRNAs in the network. …”
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11065“…DAVID database was used for gene ontology (GO) and Kyoto encyclopedia of genes and genomes enrichment analysis. …”
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11066“…The objective of this study was to evaluate the influence of the rootstock on scion disease resistance and to clarify the related molecular mechanisms. RESULTS: A Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis revealed that the expression levels of genes related to plant–pathogen interactions, plant mitogen-activated protein kinase (MAPK) signaling pathways, and plant hormone signal transduction pathways were significantly up-regulated in the scion when Qingshu 9 was used as the rootstock. …”
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11067por Wang, Yan, Zhang, Yunwu, Wang, Yujia, Shu, Xinyao, Lu, Chaorui, Shao, Shiliang, Liu, Xingting, Yang, Cheng, Luo, Jingsong, Du, Quanyu“…R software was used to analyze the Gene Ontology biological processes (BPs) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment. …”
Publicado 2021
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11068“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were performed to determine the biological functions or pathways of these DE mRNAs. …”
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11069por Zhang, Leisheng, Chi, Ying, Wei, Yimeng, Zhang, Wenxia, Wang, Fuxu, Zhang, Lei, Zou, Linglin, Song, Baoquan, Zhao, Xing, Han, Zhongchao“…Subsequently, we systematically compared the potential similarities and discrepancy both at the cellular and molecular levels via flow cytometry, multilineage differentiation, chromosome karyotyping, cytokine quantification, and transcriptome sequencing and bioinformatic analysis including single-nucleotide polymorphism (SNP), gene ontology (GO), HeatMap, principal component analysis (PCA), Kyoto Encyclopedia of Genes and Genomes (KEGG), and gene set enrichment analysis (GSEA). …”
Publicado 2021
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11070“…Subsequently, differentially expressed genes (DEGs) analysis, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway functional enrichment analyses were performed, and protein–protein interaction (PPI) networks created for each phase. …”
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11071por Hu, Haibo, Wang, Kun, Wang, Li, Du, Yanjun, Chen, Juan, Li, Yongchun, Fan, Chuanbo, Li, Ning, Sun, Ying, Tu, Shenghao, Lu, Xuechao, Zhou, Zhaoshan, Cui, Huantian“…The key targets of HJSS in COVID-19 and ARDS were obtained based on the protein–protein interaction network (PPI). Kyoto Encyclopedia of Genes and Genomes analysis (KEGG) was conducted to predict the pathways related to the targets of HJSS in COVID-19 and ARDS. …”
Publicado 2021
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11072por Huang, Jialyu, Song, Ning, Xia, Leizhen, Tian, Lifeng, Tan, Jun, Chen, Qianqian, Zhu, Jing, Wu, Qiongfang“…Functional enrichment analyses of gene modules were conducted using Gene Ontology classification and Kyoto Encyclopedia of Genes and Genomes pathway. A lncRNA-miRNA-mRNA ceRNA regulatory network was constructed according to predictive interaction derived from the LncRNADisease, miRTarBase, miRDB and TargetScan databases. …”
Publicado 2021
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11073“…LOC107427052 (encoding a nitrite reductase) was identified by Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis for further study. …”
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11074por Tong, Yuyang, Sun, Peixuan, Yong, Juanjuan, Zhang, Hongbo, Huang, Yunxia, Guo, Yi, Yu, Jinhua, Zhou, Shichong, Wang, Yulong, Wang, Yu, Ji, Qinghai, Wang, Yuanyuan, Chang, Cai“…Genes in modules related to metastasis were extracted for Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses, and a protein-protein interaction (PPI) network was built to identify the hub genes in the modules. …”
Publicado 2021
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11075por Quan, Jing, Bai, Yuchen, Yang, Yunbei, Han, Er Lei, Bai, Hong, Zhang, Qi, Zhang, Dahong“…The potential functions of identified DEGs were analyzed by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG). And then the protein - protein interaction network (PPI) was established to screen the hub genes. …”
Publicado 2021
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11076“…Gene ontology enrichment analysis and Kyoto Encyclopedia of Genes and Genomes pathway were analyzed by using the DAVID online tool. …”
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11077“…We further conducted protein-protein interaction analysis, Gene Ontology, Kyoto Encyclopedia of Genes and Genomes, gene set enrichment analysis, and gene-gene interaction analysis to explore the function and regulation networks of ERCC6 and ERCC8 in GC. …”
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11078“…Then we used LASSO Cox regression analysis to generate a prognostic signature based on m6A RNA modification regulator expression. Kyoto Encyclopedia of Genes and Genomes, Gene Ontology and Gene Set Enrichment Analyses were performed to explore differential cellular processes and signaling pathways between the two groups based on risk signature. …”
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11079“…RESULTS: In this study, elevated miR-34b levels reduced milk fat synthesis, upregulated 1,999 genes, and downregulated 2,009 genes in BMECs. Moreover, Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis of differentially expressed genes suggested that miR-34b may play an inhibitory role in milk fat synthesis via the protein kinase B (Akt)/mammalian target of rapamycin (mTOR) signaling pathway by reducing phosphorylation levels. …”
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11080“…The differentially obtained piRNA target genes and expression profiles were enrichment analysis based on gene annotation (Gene Ontology) and Kyoto Encyclopedia of Genes and Genomes. RESULTS: In the CG there was no perfusion area, neovascularization and endothelial nucleus broke through the inner boundary membrane of retinap. …”
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