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11101“…Gene ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis, and Gene Set Enrichment Analysis (GSEA) were performed to elucidate the gene functions and relative pathways. …”
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11102“…RESULTS: We exploit the sets of publicly available data derived from chromatin immunoprecipitation combined with massively parallel DNA sequencing (ChIP-Seq), produced by the The Encyclopedia of DNA Elements (ENCODE) project, to analyze H3K9me3 at assembled satellite DNA repeats in genomes of human cell lines and during mouse fetal development. …”
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11103por Heinrich, Maria, Sieg, Miriam, Kruppa, Jochen, Nürnberg, Peter, Schreier, Peter H., Heilmann-Heimbach, Stefanie, Hoffmann, Per, Nöthen, Markus M., Janke, Jürgen, Pischon, Tobias, Slooter, Arjen J. C., Winterer, Georg, Spies, Claudia D.“…We aim to investigate the association between genetic variants in cholinergic candidate genes according to the Kyoto encyclopedia of genes and genomes - pathway: cholinergic neurotransmission with the development of POD or POCD in elderly patients. …”
Publicado 2021
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11104por Olech, Monika, Ropka-Molik, Katarzyna, Szmatoła, Tomasz, Piórkowska, Katarzyna, Kuźmak, Jacek“…In turn, the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway tool classified DEGs that enrich molecular processes such as B and T-cell receptor signaling pathways, natural killer cell-mediated cytotoxicity, Fc gamma R-mediated phagocytosis, toll-like receptor signaling pathways, TNF, mammalian target of rapamycin (mTOR) signaling and forkhead box O (Foxo) signaling pathways, etc. …”
Publicado 2021
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11105por Zhang, Mi, Zhao, Wei, Liu, Shanshan, Liu, Haichuan, Liu, Liang, Peng, Qiling, Du, Chengyou, Jiang, Ning“…Survival analysis, Gene Ontology (GO), and Kyoto Encyclopedia of Genes and Genomes enrichment pathway (KEGG) analyses were performed using R software. …”
Publicado 2021
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11106por Wang, Mingqiang, Yang, Dan, Hu, Zhao, Shi, Yunke, Ma, Yiming, Cao, Xingyu, Guo, Tao, Cai, Hongbo, Cai, Hongyan“…Nitric oxide (NO) levels were measured using an NO assay kit. Results: Kyoto encyclopedia of genes and genomes (KEGG) enrichment analysis showed that differentially expressed genes were enriched in cancer signaling, PI3K-Akt signaling, and Rap1 signaling pathways. …”
Publicado 2021
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11107por Li, Yanxin, Ma, Ke, Xie, Qi, Zhang, Xianwei, Zhang, Xiulei, Chen, Kui, Kong, Lingfei, Qian, Rongjun“…Based on the mRNA expression of HOXD10, GBM patients from TCGA database were divided into low- and high-HOXD10 expression groups to analyze the Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, and construct a lncRNA-miRNA-mRNA network and a protein–protein interaction (PPI) network. …”
Publicado 2021
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11108por Chen, Liang, Lin, Yunhua, Liu, Guoqing, Xu, Rubin, Hu, Yiming, Xie, Jiaheng, Yu, Hongzhu“…KM survival analysis, univariate and multivariate COX regression analyses were employed to explore the prognostic impact of SSR1. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis and Gene set enrichment analysis (GSEA) were implemented to reveal the underlying mechanism of SSR1. …”
Publicado 2021
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11109por Yuan, Zehu, Ge, Ling, Sun, Jingyi, Zhang, Weibo, Wang, Shanhe, Cao, Xiukai, Sun, Wei“…Protein protein interaction (PPI) network, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were implemented to investigate the potential functions of DETs. …”
Publicado 2021
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11110“…The gene ontology (GO) analysis of SRMS-associated immunomodulators and immune cell marker genes showed that they were mainly enriched in the immune microenvironment molecule-related signals. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis of these genes indicated that they are involved in multiple cancer-related pathways. …”
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11111“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were conducted to predict biological functions. …”
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11112por Lin, Jing, Zeng, Jing, Liu, Sha, Shen, Xin, Jiang, Nan, Wu, Yue-Song, Li, Hong, Wang, Long, Wu, Jian-Ming“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed to elucidate the underling mechanism of DMAG against thrombocytopenia. …”
Publicado 2021
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11113“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) were used for the functional analysis. …”
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11114por Li, Jia-xin, Cao, Xun-jie, Huang, Yuan-yi, Li, Ya-ping, Yu, Zi-yuan, Lin, Min, Li, Qiu-ying, Chen, Ji-chun, Guo, Xu-guang“…METHODS: We downloaded the GSE33341 dataset from the GEO database and applied the weighted gene co-expression network analysis (WGCNA), from which we obtained some critical modules. Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) were applied to illustrate the biological functions of genes in these modules. …”
Publicado 2021
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11115por Wang, Yuehua, Gu, Wenwen, Kui, Fuguang, Gao, Fan, Niu, Yuji, Li, Wenwen, Zhang, Yaru, Guo, Zhenzhen, Du, Gangjun“…David database was used for gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis. …”
Publicado 2021
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11116“…DEGs were assessed by Gene Ontology biological process (GO-BP) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses. WGCNA was used to construct the coexpression networks in the samples with regional weakening of the AAA wall and in the control group to detect the gene modules. …”
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11117por Kleinbrink, Erica L., Gomez-Lopez, Nardhy, Ju, Donghong, Done, Bogdan, Goustin, Anton-Scott, Tarca, Adi L., Romero, Roberto, Lipovich, Leonard“…A key finding of the ENCODE (Encyclopedia of DNA Elements) Consortium, the successor of the Human Genome Project, was that the human genome contains approximately 60,000 genes, the majority of which do not encode proteins. …”
Publicado 2021
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11118“…Gene Ontology (GO) and the Kyoto Gene and Genomic Encyclopedia (KEGG) analyses were conducted on differentially expressed genes. …”
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11119por Ding, Hua, Huang, Yaqin, Shi, Jiazhong, Wang, Liwei, Liu, Sha, Zhao, Baixiong, Liu, Yuting, Yang, Jin, Chen, Zhiwen“…METHODS: Data from The Cancer Genome Atlas (TCGA), Gene Expression Omnibus (GEO) and Cancer Cell Line Encyclopedia (CCLE) databases were used to evaluate the clinical significance of SNF5 in BC. …”
Publicado 2021
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11120por Mao, Jinzhu, Wang, Dongxu, Long, Junyu, Yang, Xu, Lin, Jianzhen, Song, Yiwei, Xie, Fucun, Xun, Ziyu, Wang, Yanyu, Wang, Yunchao, Li, Yiran, Sun, Huishan, Xue, Jingnan, Song, Yang, Zuo, Bangyou, Zhang, Junwei, Bian, Jin, Zhang, Ting, Yang, Xiaobo, Zhang, Lei, Sang, Xinting, Zhao, Haitao“…Significantly differentially enriched taxa and prognosis associated taxa were identified. The Kyoto Encyclopedia of Genes and Genomes database and MetaCyc database were further applied to annotate the differentially enriched taxa to explore the potential mechanism of the gut microbiome influencing cancer immunotherapy. …”
Publicado 2021
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