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11341“…We applied Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses for functional annotation. …”
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11342por Fan, Kai, Zhou, Shican, Jin, Ling, Tan, Shiwang, Lai, Ju, Zhang, Zimu, Li, Jingwen, Xu, Xiayue, Yao, Chunyan, Yan, Zhiqiang, Yu, Shaoqing“…Gene Ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis of DEGs were conducted using DAVID database. …”
Publicado 2023
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11343por Jo, Jae-Hyun, Ok, Seon-Mi, Kim, Dong-Kyu, Kim, Yeong-Mu, Park, Jong-Uk, Jung, Dong-Hyun, Kim, Hye-Ji, Seong, Hyun-A, Cho, Hyo Je, Nah, Jihoon, Kim, Sangjune, Fu, Haiqing, Redon, Christophe E., Aladjem, Mirit I., Jang, Sang-Min“…Correlation between RepID and DAB2 expression was examined in the Cancer Cell Line Encyclopedia (CCLE) through the CellMinerCDB portal. …”
Publicado 2023
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11344por Zhao, Lei, Li, Jia, Mo, Gang, Cao, Deping, Li, Chun, Huang, Guoyang, Jiang, Liping, Chen, Gen, Yao, Hongbing, Peng, Xiaohong“…GO (Gene Ontology) and KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway analyses were performed to investigate the potential role of EBI3 in liver fibrosis by regulating the extracellular matrix structural constituent and collagen catabolic process. …”
Publicado 2023
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11345por Yu, Sheng, Tang, Lingxue, Zhang, Qianqian, Li, Wen, Yao, Senbang, Cai, Yinlian, Cheng, Huaidong“…The identification of differentially expressed genes (DEGs) between high- and low-risk groups was carried out using Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. …”
Publicado 2023
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11346por Kołat, Damian, Kałuzińska-Kołat, Żaneta, Kośla, Katarzyna, Orzechowska, Magdalena, Płuciennik, Elżbieta, Bednarek, Andrzej K.“…High-throughput sequencing of cellular variants (deposited in the Gene Expression Omnibus database under the GSE193659 record) enabled the investigation of WWOX/AP-2-dependent differences using various bioinformatics tools (e.g., limma-voom, FactoMineR, multiple Support Vector Machine Recursive Feature Elimination (mSVM-RFE), miRDB, Arena-Idb, ncFANs, RNAhybrid, TargetScan, Protein Annotation Through Evolutionary Relationships (PANTHER), Gene Transcription Regulation Database (GTRD), or Evaluate Cutpoints) and repositories such as The Cancer Genome Atlas (TCGA) and Cancer Cell Line Encyclopedia. The most relevant observations from cap analysis gene expression sequencing (CAGE-seq) were confirmed using real-time PCR, whereas TCGA data were validated using the GSE31684 cohort. …”
Publicado 2023
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11347“…Gene Ontology (GO) enrichment analysis and Kyoto encyclopedia of genes and genomes signaling pathway analysis, some predicted targets of these miRNAs are involved in the pathophysiological process of AAD. …”
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11348por Qiu, Jiechuan, Wang, Zicheng, Zhao, Leizuo, Zhang, Peizhi, Xu, Yingkun, Xia, Qinghua“…The Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) were used to analyze the potential signaling pathways and biological functions of differential genes. …”
Publicado 2023
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11349“…A total of 1,640 metabolic-related genes were downloaded from the Kyoto Encyclopedia of Genes and Genomes (KEGG) database. Then, consensus clustering was performed to divide the BLCA patients into two metabolic subtypes according to the expression of metabolic-related genes. …”
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11350por Guo, Shuqing, Chai, Shaohua, Guo, Yan, Shi, Xing, Han, Fei, Qu, Ting, Xing, Lu, Yang, Qinghua, Gao, Jinfeng, Gao, Xiaoli, Feng, Baili, Song, Hui, Yang, Pu“…Based on the functions of homologous genes in Arabidopsis and the Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) gene annotations, five genes were predicted as candidate genes for further studies. …”
Publicado 2023
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11351por Zhang, Xuqiang, Wang, Yuxin, Fan, Ruochen, Zhang, Liying, Li, Zhuting, Zhang, Yanmei, Zheng, Wei, Wang, Lulu, Liu, Baoquan, Quan, Chunshan“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses demonstrated that a number of proteins were significantly enriched in multiple pathways involving fatty acid synthesis and butyrate synthesis. …”
Publicado 2023
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11352por Xu, Liangsheng, Liu, Hailong, Zhu, Shan, Meng, Yangguang, Wang, Yinghao, Li, Jianyu, Zhang, Feiran, Huang, Lili“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses indicated that these DEPs were mainly involved in pathways associated with carbon metabolism, biosynthesis of antibiotics, citrate cycle (TCA cycle), glycolysis/gluconeogenesis, glutathione metabolism, ribosomes, and pentose phosphate pathways. …”
Publicado 2023
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11353por Zhuang, Jingming, Mo, Jiahang, Huang, Zhengnan, Yan, Yilin, Wang, Zeyi, Cao, Xiangqian, Yang, Chenkai, Shen, Bing, Zhang, Fang“…Key targets were identified using Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) functional enrichment analysis. …”
Publicado 2023
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11354por Jiang, Huanyu, Zhou, Rui, An, Liping, Guo, Junfeng, Hou, Xinhui, Tang, Jiao, Wang, Fei, Du, Quanyu“…Gene ontology enrichment analysis and kyoto encyclopedia of genes and genomes analysis were conducted using Metascape. …”
Publicado 2023
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11355por Lian, Piaopiao, Cai, Xing, Wang, Cailin, Liu, Ke, Yang, Xiaoman, Wu, Yi, Zhang, Zhaoyuan, Ma, Zhuoran, Cao, Xuebing, Xu, Yan“…Feature genes were screened using weighted correlation network analysis (WGCNA) and processed via Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analyses. Furthermore, three machine-learning algorithms were used to narrow down the selection of the feature genes. …”
Publicado 2023
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11356por Jia, Feifan, Chen, Yuanyuan, Xin, Gaojie, Li, Lingmei, Liu, Zixin, Xu, Sujuan, Gao, Jiaming, Meng, Hongxu, Shi, Yue, Ma, Yanlei, Li, Lei, Fu, Jianhua“…Cytoscape 3.9.0 was applied to construct a protein–protein interaction (PPI) network, and Gene Ontology (GO) functional annotation and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis were performed using metascape. …”
Publicado 2023
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11357“…Further analysis using Kyoto Encyclopedia of Genes and Genomes (KEGG) and Clusters of Orthologous Groups (COG) showed significant differences in the metabolic functionalities of the gut microbiota between the two groups. …”
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11358por Zhou, Donglin, Zhu, Yimin, Jiang, Peng, Zhang, Tongfu, Zhuang, Jianfeng, Li, Tao, Qi, Linzeng, Wang, Yunyan“…Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses revealed that the DEPRGs were mostly enriched in the NOD-like receptor signaling pathway, interleukin-1 beta production, and the inflammasome complex. …”
Publicado 2023
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11359por Jiang, Jing, Zhang, Yu, Wang, Jun, Yang, Xuefei, Ren, Xingchang, Huang, Hai, Wang, Jue, Lu, Jinhua, Zhong, Yazhen, Lin, Zechen, Lin, Xianlei, Jia, Yewei, Lin, Shengyou“…Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) databases were utilized to predict biological processes and signaling pathways, respectively. …”
Publicado 2023
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11360por Wang, Shichong, Huo, Jiali, Liu, Yilin, Chen, Lingyun, Ren, Xiang, Li, Xingxin, Wang, Min, Jin, Peng, Huang, Jinbo, Nie, Neng, Zhang, Jing, Shao, Yingqi, Ge, Meili, Zheng, Yizhou“…The Gene Ontology analysis of differentially expressed genes (DEGs) revealed involvement of various cellular processes, such as lymphocyte chemotaxis, lymphocyte migration and response to interferon-gamma. The Kyoto Encyclopedia of Genes and Genomes analysis illustrated upregulation of critical pathways associated with T cell function after coculturing with AA-Exos compared with HD-Exos, such as graft-versus-host disease, Th17 cell differentiation and JAK-STAT signaling pathway. …”
Publicado 2023
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