“…The 10 simple rules for using public biological data are: (1) use public data purposefully in your research; (2) evaluate data for your use case; (3) check data reuse requirements and embargoes; (4) be aware of ethics for data reuse; (5) plan for data storage and compute requirements; (6) know what you are downloading; (7) download programmatically and verify integrity; (8) properly cite data; (9) make reprocessed data and models Findable, Accessible, Interoperable, and Reusable (FAIR) and share; and (10) make pipelines and code FAIR and share. …”
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“…The massive growth of biomedical knowledge in computable formats poses a challenge for organizations as they consider mobilizing artifacts to be findable, accessible, interoperable, reusable, and trustable. Formed in 2016, the Mobilizing Computable Biomedical Knowledge (MCBK) community is taking action to ensure that health organizations have the infrastructure in place to access and apply computable knowledge; to develop national policies and standards that require all data to be discoverable and available for safe and fair use; and to promote the widespread adoption and implementation of health knowledge in support of healthcare, biomedical research, public health, and education. …”
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“…RESULTS: gget is a free and open-source command line tool and Python package that enables efficient querying of genomic reference databases, such as Ensembl. gget consists of a collection of separate but interoperable modules, each designed to facilitate one type of database querying required for genomic data analysis in a single line of code. …”
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“…It can be viewed as an innovative “workbench” incorporating and orchestrating a set of interoperable services that reduce the data intensiveness and complexity overload at critical decision points to a manageable level, thus permitting stakeholders to be more productive and effective in their work practices.…”
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“…You will learn how to deploy the software, use In-Memory Advisor, build queries, and interoperate with Oracle RAC and Multitenant. A complete chapter of case studies illustrates real-world applications…”
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“…We'll also talk about the directions of our respective technical and community developments, and related to the conference theme of Sustaining Open, discuss how our various systems can co-exist, interoperate, and thrive now and into the future. This panel will be a great opportunity for newcomers to Open Repositories to get a crash course on the major repository options and meet representatives from each of their communities. …”
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“…INTRODUCTION: Rare disease patient data are typically sensitive, present in multiple registries controlled by different custodians, and non-interoperable. Making these data Findable, Accessible, Interoperable, and Reusable (FAIR) for humans and machines at source enables federated discovery and analysis across data custodians. …”
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“…When LOBD is applied in the domain of documentary information, it is possible to generate bibliographic data with the capacity of being openly and significantly vinculated through a system based on an interoperable scheme.…”
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“…Blockchain technology in the healthcare industry has potential to enable enhanced privacy, increased security, and an interoperable data record. Blockchain technology is being implemented in dental care systems to store and share medical information, improve insurance claims, and provide innovative dental data ledgers. …”
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“…We show the utility of MIHCSME for HCS data using multiple examples from the Leiden FAIR Cell Observatory, a Euro-Bioimaging flagship node for high content screening and the pilot node for implementing Findable, Accessible, Interoperable and Reusable (FAIR) bioimaging data throughout the Netherlands Bioimaging network.…”
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“…In this paper we are presenting the UniDA framework, an integral solution for the development of systems that require the integration and interoperation of devices and technologies in HIEs. It provides developers and installers with a uniform conceptual framework capable of modelling an HIE, together with a set of libraries, tools and devices to build distributed instrumentation networks with support for transparent integration of other technologies. …”
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“…As one of the early adopters of the wiki approach to model organism databases, EcoliWiki was designed to not only facilitate community-driven sharing of biological knowledge about E. coli as a model organism, but also to be interoperable with other data resources. EcoliWiki content currently covers genes from five laboratory E. coli strains, 21 bacteriophage genomes, F plasmid and eight transposons. …”
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“…The FAIR acronym recommends that authors and publishers should aim to make their output Findable, Accessible, Interoperable and Reusable. In this opinion article, I explore the parallel view that we should take a collective stance on making the dissemination of scientific data fair in the conventional sense, by being mindful of equity and justice for patients, clinicians, academics, publishers, funders and academic institutions. …”
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“…Second, the normalization by NLP facilitated the interoperation between AERS-DM and the EMR. To demonstrate this methodology, we investigated potential ADEs associated with drugs (class level) for rheumatoid arthritis (RA) patients. …”
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“…There is an urgent need to develop international data collection compliant with FAIR (Findable, Accessible, Interoperable, Re-usable) and standardised surveillance systems for sedentary behaviour.…”
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“…In addition to providing the elements necessary to unambiguously encode existing constraint-based models, the FBC Package provides an open platform facilitating the continued, cross-community development of an interoperable, constraint-based model encoding format.…”
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“…However, due to the complexity and the size of the data repository and a lack of an interoperable interface, the creation of pharmacologically meaningful workflows utilizing these data is severely hampered. …”
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“…This editorial argues that it is time for the traumatic stress field to join the growing international movement towards Findable, Accessible, Interoperable, and Re-usable (FAIR) research data, and that we are well-positioned to do so. …”
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“…The interoperations of endpoint devices are generally achieved by gateways in Internet of Things (IoT) systems. …”
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