Materias: “…Open Source Tools and Methods…”
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“…The aim of this study was to validate an open-source jump mat (Chronojump Boscosystems) against a proprietary jump mat (Globus Ergo Tester). …”
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“…RESULTS: A chemical curation pipeline has been developed using the open source toolkit RDKit. It comprises three components: a Checker to test the validity of chemical structures and flag any serious errors; a Standardizer which formats compounds according to defined rules and conventions and a GetParent component that removes any salts and solvents from the compound to create its parent. …”
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“…Neurodynamic Utility Toolbox for Magnetoencephalo- and Electroencephalography (NUTMEG) is an open-source MATLAB-based toolbox for the analysis and reconstruction of magnetoencephalography/electroencephalography data in source space. …”
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“…Here we introduce a free, open-source rt-fMRI package, the Pyneal toolkit, designed to address this limitation. …”
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“…Here, we developed an open-source standalone electrophysiology recording system for rodents (OSERR). …”
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“…The present study describes an open-source, wireless autonomic vest specifically designed for use in infants 8–24 months of age in order to measure cardiac activity, respiration, and movement. …”
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“…To address this gap, we developed an open-source suite of 14 optimized Bioluminescence Resonance Energy Transfer (BRET) Gαβγ biosensors (dubbed TRUPATH) to interrogate the transducerome with single pathway resolution in cells. …”
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“…High instrument costs, and a lack of open-source hardware and acquisition software have limited smFRET’s broad application by non-specialists. …”
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“…We introduce Rxnat (https://github.com/adigherman/Rxnat), an open-source R package designed to interact with any XNAT-based repository. …”
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“…We take a step in that direction and present ecoSound-web: an open-source, online platform for ecoacoustics designed and built by ecologists and software engineers. ecoSound-web can be used for storing, organising, and sharing soundscape projects, manually creating and peer-reviewing annotations of soniferous animals and phonies, analysing audio in time and frequency, computing alpha acoustic indices, and providing reference sound libraries for different taxa. …”
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“…This device may aid pre-clinical and clinical projects in low- and middle-income countries and is lined up with open source equipment devices.…”
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“…In this work we propose an open source, cost-effective motorized swivel for behavioral and neural recordings in small rodents, offering a flexible solution for managing cable twisting and tangling in a variety of experimental settings with minimal human supervision. • The device operates independently of the data acquisition system, and it can be controlled through any popular platform such as Arduino or Raspberry Pi. • All mechanical parts are 3D-printed, allowing to customize the design to fit specific experimental needs, and electromechanical components can be sourced from all major distributors, keeping the cost for the entire system under $500. • The proposed commutator is compatible with commercial or custom data acquisition systems supporting up to 10 data lines (2 for LVDS signals) and 2 power lines.…”
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“…Efficient processing of the photoelectron event streams at a rate of up to tens of megabytes per second will enable rapid band mapping for materials characterization. We describe an open-source workflow that allows user interaction with billion-count single-electron events in photoemission band mapping experiments, compatible with beamlines at 3(rd) and 4(rd) generation light sources and table-top laser-based setups. …”
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“…It develops a novel end-to-end algorithm using convolutional neural network applied to raw accelerometric signals recorded by an open-source wrist-worn actigraph. The aim of the study is to develop an automatic classifier that: (1) is highly generalizable to heterogenous subjects, (2) would not require manual features’ extraction, (3) is computationally lightweight, embeddable on a sleep tracking device, and (4) is suitable for a wide assortment of actigraphs. …”
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“…We also provide an open-source computational framework using R for the analysis of the phase of behavior using circular statistics. …”
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“…Given these shortcomings, the contribution of this paper is two-fold: (1) we present a set of methods to comprehensively analyze and visualize the results of single-task and multi-task challenges and apply them to a number of simulated and real-life challenges to demonstrate their specific strengths and weaknesses; (2) we release the open-source framework challengeR as part of this work to enable fast and wide adoption of the methodology proposed in this paper. …”
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“…As this software is open-source, it can be modified by users to serve more specific needs. …”
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